TABLE 2.
Primers used in this study
Primer | Sequence |
---|---|
Degenerate primers | |
N terminal | 5′ GCNCCNACNCARGGNGAYGGNACN 3′ |
C terminal | 5′ NARRTARTTNARNGTRAARTTNGC 3′ |
Adapter sequence | 5′ GATCCTAATACCACTCACATAGGGCGGCCGCCCGGGC 3′, 3′ GATTATGGTGAGTGTATCCCGCCGGCGGGCCCG 5′ |
WP1 | 5′ GATCCTAATACCACTCACATAGGGCGGCCGCCCGGGC 3′ |
Biotinylated primer (BP1) | 5′ GTGTTCAGGTTTTGATTCACCACCATC 3′ |
IP2 | 5′ GTTCTTGATTGAACAGGCTGC 3′ |
Primers for amplifying 537-bp fragment | |
Forward primer | 5′ GGATCCATGAAACTTAACACAATTGGC 3′ |
Reverse primer | 5′ AAGCTTAAGGTAGTTGAGAGTGAAGTTG 3′ |
Primers for point mutations | |
Val32Ala (forward) | 5′ CTCAAGGTGACGGCGCAGCAAAATTCACCGGTTCTATTATTAATG 3′ |
Phe34Ala (forward) | 5′ GGTGACGGCGCAGTTAAAGCAACCGGTTCTATTATTAATGC 3′ |
Ile38Ala (forward) | 5′ GCAGTTAAATTCACCGGTTCTGCAATTAATGCAGCCTGTTCAATC 3′ |
Triple mutation (forward) | 5′ CTCAAGGTGACGGCGCGCAAAGCAACCGGTTCGCAATTAATGCAGCCTGTTCAAT |
(Val-Phe-Ile→Ala-Ala-Ala) | CAAG 3′ |