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. Author manuscript; available in PMC: 2016 Dec 19.
Published in final edited form as: J Med Genet. 2015 Jan 20;52(4):231–239. doi: 10.1136/jmedgenet-2014-102832

Table 4.

Putatively functional SNPs correlated with rs3024493

SNP Position r2 with rs3024493 Variant Location H3K27Ac mark DNaseI site Transcription factor binding site
rs3024505 chr1:206939904 0.947 Intergenic (1 kb downstream of IL10) Yes Yes NFKB, STAT3, PU.1
rs3024495 chr1:206942413 0.947 IL10 intronic Yes – –
rs3024493 chr1:206943968 – IL10 intronic Yes Yes NFKB, STAT3, POL2
rs3122605 chr1:206955041 0.853 Intergenic (9.2 kb upstream of IL10) – Yes BATF
rs61815643 chr1:206956116 0.732 Intergenic (10 kb upstream of IL10) Yes Yes NFKB

rs3024493 was queried against 1000 genome project (1KGP) database for most correlated proxies (r2>0.7). The correlated SNPs were tested and annotated by functional impact using ANNOVAR40 and ENCODE database for multiple functional tracks. The table only lists the tracks with mapping location of correlated variants.

SNP, single nucleotide polymorphism.