Table S2.
Transcripts up-regulated by SFB only in the ileum
| Gene symbol | Mean expression, SFB | FC (BA/GF) | FC (SFB/GF) | FC (CH/GF) | P value (SFB/GF) |
| Igk-V19-14 | 853.4267302 | 0.110261244 | 2.988557144 | −1.376516717 | 0.006500653 |
| Duoxa2 | 665.8108381 | 0.306584696 | 2.838439663 | 0.460138644 | 0.000283233 |
| Gm16848 | 261.5989275 | −0.055555362 | 2.663868886 | −0.638987242 | 0.01286801 |
| Saa1 | 26.00806464 | 0.000723811 | 2.598610916 | 0.003127799 | 0.011514492 |
| Nos2 | 666.5484364 | 0.27184227 | 2.053561217 | −0.18707337 | 0.003574072 |
| Duox2 | 921.5562128 | 0.229189845 | 2.036918302 | 0.047404289 | 0.000825664 |
| Fut2 | 193.3725294 | 0.189200961 | 1.960981174 | 0.322889829 | 0.04051458 |
| Tat | 105.3294106 | 0.068066196 | 1.864156053 | 0.137433476 | 0.000766139 |
| Smpdl3b | 379.0667855 | 0.103363249 | 1.703118975 | 1.171393754 | 0.022155074 |
| Upp1 | 1,100.373966 | 0.17593797 | 1.692262354 | 0.332276036 | 0.007958242 |
| 2010001M09Rik | 233.3053017 | 0.141494283 | 1.63084607 | −0.015283966 | 0.000888497 |
| Pla2g5 | 220.9362025 | 0.135648046 | 1.602086072 | 0.079130172 | 3.21368E-05 |
| Zbp1 | 440.1568157 | 0.11858657 | 1.542272461 | 0.299552881 | 0.020338646 |
| Stom | 1,280.475012 | 0.115229948 | 1.411132497 | 0.389142369 | 0.00430015 |
| Il18 | 290.0474797 | 0.214639793 | 1.294489296 | 0.490521638 | 0.03713033 |
| Ptk6 | 622.6759816 | 0.170309651 | 1.274728699 | 0.121509504 | 0.031550056 |
| Prdm1 | 199.5191639 | 0.195016726 | 1.25581363 | 0.626627876 | 0.004514204 |
| Derl3 | 243.9642226 | 0.082054973 | 1.166445329 | −0.056050993 | 0.001277782 |
| Cd7 | 363.7810359 | 0.224355143 | 1.132213065 | 0.54358203 | 0.004272466 |
| Dmbt1 | 5,071.396852 | 0.166475941 | 1.131090173 | 0.289636614 | 0.002590963 |
| Psmb8 | 310.7899556 | 0.046296448 | 1.101849779 | 0.452490375 | 0.004822295 |
| Trp53i11 | 1,474.848073 | 0.124066019 | 1.024766917 | 0.234757761 | 0.003944383 |
| Pou2af1 | 285.3608501 | 0.222996292 | 0.997894796 | 0.029802605 | 0.00825597 |
| Cd274 | 250.3089872 | 0.243929123 | 0.976944452 | 0.290112001 | 0.002209936 |
| H2-DMb2 | 383.5890869 | 0.237152621 | 0.957862477 | 0.174433294 | 0.010548807 |
| Nlrc5 | 217.2882591 | 0.233973524 | 0.94749075 | 0.152698667 | 0.001627023 |
| Capg | 265.8165695 | 0.128175453 | 0.94705339 | −0.102103848 | 0.000276135 |
| Hk2 | 393.4849339 | 0.146949907 | 0.93364982 | 0.133185761 | 0.007799811 |
| Ifi47 | 178.0393997 | 0.145281576 | 0.927939241 | 0.271351842 | 0.001837908 |
| Mfsd2a | 296.8908829 | 0.128438275 | 0.926244391 | 1.098395273 | 0.021505061 |
| AA467197 | 1,453.467133 | −0.052688895 | 0.92183718 | 0.153596259 | 0.049380592 |
| Psmb9 | 649.696286 | 0.135138631 | 0.913310425 | 0.344513587 | 0.000930324 |
| H2-gs10 | 509.7286242 | 0.065015432 | 0.89771305 | 0.552932722 | 0.01838137 |
| Prss27 | 347.7431618 | 0.08194731 | 0.897219636 | 0.019211733 | 0.004778358 |
| Gm12250 | 214.7544773 | 0.326061195 | 0.891062269 | 0.388392121 | 0.001361823 |
| 2210407C18Rik | 1,658.390203 | −0.041923819 | 0.880681682 | 1.01260504 | 0.03454189 |
| Mafb | 405.7671552 | −0.150637129 | 0.876432509 | 0.541579007 | 0.047145682 |
| Slc40a1 | 485.7287587 | −0.2832559 | 0.870688425 | −0.29689716 | 0.020210258 |
| Herc6 | 215.6600076 | 0.243997375 | 0.865545115 | 0.462827494 | 0.021314191 |
| Cd28 | 93.06588762 | 0.174280638 | 0.861591875 | −0.054186363 | 0.026116773 |
| Rabl5 | 444.4059466 | 0.0274047 | 0.854330423 | 0.207181681 | 0.010381511 |
| Ociad2 | 1,025.05628 | −0.005388622 | 0.852159465 | 0.38443276 | 0.012371807 |
| Casp4 | 751.1385615 | −0.045686437 | 0.829900103 | 0.179037389 | 0.003306849 |
| Ceacam10 | 223.3571229 | −0.038221539 | 0.822062891 | 0.13183611 | 0.013837654 |
| Gm10384 | 118.0494671 | 0.136910477 | 0.819371836 | 0.097155785 | 0.028751693 |
| Ikzf3 | 130.2163585 | 0.14639016 | 0.809794649 | 0.359101281 | 0.004060268 |
| Cd38 | 3,538.761494 | 0.137103726 | 0.807769453 | −0.085486731 | 0.011668035 |
| 1810065E05Rik | 1,332.481968 | −0.153522166 | 0.803854949 | −1.087182267 | 0.01789105 |
| AI504432 | 105.5326384 | 0.216285755 | 0.803686059 | 0.110420276 | 0.003062097 |
| Nlrc5 | 175.6758691 | 0.190266595 | 0.801752572 | 0.230269194 | 0.000813309 |
| Tgm2 | 1,254.452033 | 0.074964528 | 0.79962031 | 0.028863601 | 0.005017818 |
| B3gnt7 | 453.8156872 | 0.010985062 | 0.791711888 | 0.006540703 | 0.020735661 |
| Selplg | 328.4064854 | 0.259187786 | 0.787528997 | 0.236169353 | 0.010638523 |
| Stk10 | 317.0814944 | −0.030477066 | 0.774196696 | 0.564182614 | 0.031996061 |
| Lgmn | 1,566.386308 | 0.21281686 | 0.769491493 | 0.365697531 | 0.000115332 |
| Lrg1 | 121.2524078 | 0.222870817 | 0.749145127 | 0.1430782 | 0.019811432 |
| Reg3b | 11,101.33873 | 0.284081772 | 0.747342427 | −0.156209311 | 0.001661347 |
| Asns | 1,434.581547 | 0.080252656 | 0.741259277 | −0.105818096 | 0.044625471 |
| St3gal1 | 414.3189977 | 0.209970335 | 0.737906365 | 0.510967996 | 0.00326104 |
| Stat1 | 955.3798545 | 0.310438807 | 0.733851126 | 0.298675517 | 0.027991341 |
| Nlrc5 | 246.7167169 | 0.243963257 | 0.733514055 | 0.120431888 | 0.012482394 |
| Pla2g2a | 1,267.478799 | 0.322326643 | 0.731566764 | −0.0425949 | 0.022015169 |
| Myl7 | 199.7102766 | −0.12486677 | 0.73017749 | 0.057705155 | 0.00874179 |
| Gimap6 | 344.4959519 | 0.308114583 | 0.726718786 | 0.270842634 | 0.019472668 |
| Bhmt | 134.8292305 | 0.096917242 | 0.722770695 | 0.010943844 | 0.000683747 |
| Il12rb2 | 85.40593392 | 0.163310668 | 0.718114362 | 0.214559594 | 0.004065423 |
| Bhmt | 98.84113938 | 0.108827688 | 0.716185492 | 0.077385429 | 0.002031448 |
| Endod1 | 827.8649249 | 0.007403989 | 0.71300915 | 0.118108166 | 0.042632407 |
| St6gal1 | 288.1671864 | 0.14116588 | 0.712785754 | −0.040176173 | 0.02554139 |
| Barx2 | 255.3722715 | 0.21750414 | 0.704020052 | 0.493159202 | 0.005805398 |
| Cfi | 75.30842049 | 0.098843456 | 0.703514107 | 0.189498165 | 0.021058133 |
| Pfkfb3 | 202.4205171 | 0.218276151 | 0.703204147 | 0.635880759 | 0.000285107 |
| H2-Aa | 3,698.470247 | 0.301759713 | 0.69934207 | −0.067194315 | 0.040362026 |
| Mfsd4 | 541.0736322 | 0.077640246 | 0.696209578 | 0.173072728 | 0.043306204 |
| Itgam | 334.915123 | 0.185467634 | 0.691039761 | −0.169259504 | 0.009938058 |
| Gimap4 | 244.2536863 | 0.264307854 | 0.690126653 | 0.267964615 | 0.017901949 |
| Unc5cl | 500.2622859 | −0.03710276 | 0.686866838 | 0.364319145 | 0.011640721 |
| Serpina3f | 113.8261155 | 0.232269265 | 0.686538056 | 0.201577533 | 0.012034229 |
| Cd79b | 255.304071 | 0.065934588 | 0.684774566 | 0.029415705 | 0.029836091 |
| Gch1 | 96.54637783 | −0.111868491 | 0.684119427 | 0.165463347 | 0.034776573 |
| Alpk1 | 308.9951264 | 0.214644533 | 0.681968079 | −0.180876815 | 0.009157362 |
| Nxf7 | 167.6610135 | 0.08937288 | 0.67746157 | 0.135004618 | 0.027199713 |
| Muc4 | 455.7438252 | 0.073473018 | 0.675703922 | 0.254889469 | 0.032263311 |
| Itgal | 181.6486518 | 0.21087756 | 0.669096914 | 0.212685791 | 0.002301608 |
| Nlrc5 | 82.91887014 | 0.342300649 | 0.669006382 | 0.267637632 | 0.000144179 |
| 9930111J21Rik2 | 355.7561139 | 0.287354354 | 0.662332235 | 0.336324909 | 0.024774891 |
| Tmem173 | 332.9206654 | 0.266926837 | 0.658114938 | −0.001165033 | 0.015214991 |
| Gm1965 | 630.4514691 | 0.154048636 | 0.658047981 | −0.023995136 | 0.004048673 |
| Tnfsf13b | 461.5308732 | 0.138433901 | 0.65586992 | 0.655461998 | 0.027428361 |
| H2-D1 | 3,369.916118 | 0.031611759 | 0.655666978 | 0.355051344 | 0.016218375 |
| Fah | 215.4706342 | 0.214319266 | 0.65384814 | 0.215162646 | 0.001198049 |
| Ccnd1 | 1,748.865661 | 0.209333742 | 0.647239044 | −0.098793355 | 0.007926484 |
| Zc3h12a | 312.3430679 | −0.046646432 | 0.634041124 | 0.061635625 | 0.016670529 |
| Trp53inp1 | 998.20059 | −0.194029153 | 0.632220939 | −0.233697893 | 0.032612192 |
| Tmem50b | 1,927.976387 | 0.006210008 | 0.625928581 | 0.298653291 | 0.000762451 |
| Irf1 | 1,262.626635 | 0.110061307 | 0.613485967 | 0.323835995 | 0.001393747 |
| Ehd4 | 730.7094354 | 0.290509571 | 0.603753454 | 0.420399619 | 0.014812246 |
| Cxcl13 | 764.5884394 | 0.327007914 | 0.598709686 | −0.292033319 | 0.023829593 |
| Tigit | 196.0336814 | 0.108702112 | 0.598202564 | 0.124200721 | 0.002423849 |
| Nlrc5 | 144.1034463 | 0.187870451 | 0.597781203 | 0.147835161 | 0.009141048 |
| Cyr61 | 308.6350772 | 0.057401631 | 0.596513639 | 0.085894925 | 0.005199748 |
| Sbno2 | 461.0022599 | −0.053220029 | 0.59125327 | 0.187734982 | 0.03080481 |
| Cd96 | 123.7371438 | 0.182993928 | 0.586774016 | 0.10762491 | 0.016158982 |
| Irf8 | 1,497.074584 | 0.098273904 | 0.58647347 | 0.073806163 | 0.004742564 |
| Irgm1 | 657.8123267 | 0.270432787 | 0.585964499 | −0.159198396 | 0.009259095 |
Log2 (FC) values are shown; P values are calculated by Student's t test. CH, Clostridium histolyticum.