Skip to main content
. Author manuscript; available in PMC: 2018 Jan 1.
Published in final edited form as: Proteins. 2016 Nov 13;85(1):39–45. doi: 10.1002/prot.25188

Figure 1. Clashes in docking of unbound proteins.

Figure 1

For 102 complexes in DOCKGROUND Benchmark 3, 2513 free docking and 134 template-based docking predictions of acceptable and higher quality were assessed by average (A) and maximum (B) penetrations, calculated from Eqs 1 and 2, respectively. Reference is the distribution of clashes in the 102 reference complexes obtained by superimposition of the two unbound protein structures onto corresponding proteins in the co-crystallized complex.