TABLE 2.
Genes with restricted distribution in rickettsial genomes
| Category and RT no. | Function | Position
|
Gene | Description | RP no. | RC no. | |
|---|---|---|---|---|---|---|---|
| Start | Stop | ||||||
| R. typhi ORFs not found in R. conorii or R. prowazekii | |||||||
| RT0148 | Unknown | 189321 | 189461 | None | Hypothetical protein | None | None |
| RT0154 | Unknown | 195647 | 195811 | None | Hypothetical protein | None | None |
| RT0155 | Unknown | 196020 | 196154 | None | Hypothetical protein | None | None |
| RT0184 | Unknown | 233126 | 233230 | None | Hypothetical protein | None | None |
| RT0199 | Unknown | 255711 | 255848 | None | Hypothetical protein | None | None |
| RT0201 | Unknown | 258437 | 258853 | None | Conserved hypothetical protein | None | None |
| RT0301 | Unknown | 382095 | 383057 | None | Rickettsial conserved hypothetical protein | None | None |
| RT0364 | Unknown | 461966 | 462193 | None | Hypothetical protein | None | None |
| RT0418 | Unknown | 529419 | 529619 | None | Hypothetical protein | None | None |
| RT0480 | Unknown | 614027 | 614167 | None | Hypothetical protein | None | None |
| RT0499 | Unknown | 640260 | 640412 | None | Hypothetical protein | None | None |
| RT0505 | Unknown | 645384 | 645518 | None | Hypothetical protein | None | None |
| RT0525 | Unknown | 668721 | 668858 | None | Hypothetical protein | None | None |
| RT0538 | Unknown | 686867 | 687124 | None | Hypothetical protein | None | None |
| RT0542 | Unknown | 694039 | 694113 | None | Hypothetical protein | None | None |
| RT0601 | Unknown | 778825 | 778974 | None | Hypothetical protein | None | None |
| RT0607 | Unknown | 790366 | 790560 | None | Hypothetical protein | None | None |
| RT0664 | Unknown | 841537 | 841782 | None | Hypothetical protein | None | None |
| RT0685 | Unknown | 868875 | 868988 | None | Hypothetical protein | None | None |
| RT0708 | Unknown | 906635 | 906880 | None | Hypothetical protein | None | None |
| RT0751 | Unknown | 955938 | 956084 | None | Hypothetical protein | None | None |
| RT0772 | Unknown | 984575 | 984706 | None | Hypothetical protein | None | None |
| RT0796 | Unknown | 1018722 | 1018862 | None | Hypothetical protein | None | None |
| RT0835 | Unknown | 1066262 | 1066381 | None | Hypothetical protein | None | None |
| R. typhi ORFs found in R. conorii but not in R. prowazekii | |||||||
| RT0034 | Virulence | 47136 | 47423 | virB3 | Probable type IV secretory system protein VirB3 | None | RC0140 |
| RT0172 | General metabolism | 217326 | 218498 | None | Carboxypeptidase | None | RC0228 |
| RT0213 | Unknown | 275036 | 275173 | None | Rickettsial conserved hypothetical protein | None | RC0298 |
| RT0270 | Unknown | 341040 | 341273 | None | Rickettsial conserved hypothetical protein | None | RC1041 |
| RT0314 | Unknown | 397194 | 397355 | None | Rickettsial conserved hypothetical protein | None | RC0444 |
| RT0373 | Unknown | 474114 | 474401 | None | Rickettsial conserved hypothetical protein | None | RC0530 |
| RT0520 | Unknown | 660968 | 661153 | None | Rickettsial conserved hypothetical protein | None | RC0767 |
| RT0563 | Unknown | 728779 | 728994 | None | Rickettsial conserved hypothetical protein | None | RC0876 |
| RT0610 | Unknown | 794494 | 794634 | None | Rickettsial conserved hypothetical protein | None | RC0961 |
| RT0623 | Unknown | 813926 | 814159 | None | Rickettsial conserved hypothetical protein | None | RC0453 |
| RT0665 | Unknown | 842115 | 842354 | None | Rickettsial conserved hypothetical protein | None | RC1041 |
| RT0670 | Unknown | 848273 | 848619 | None | Rickettsial conserved hypothetical protein (frameshift 848487-848490) | None | RC1027 |
| RT0672 | Unknown | 850822 | 851025 | None | Rickettsial conserved hypothetical protein | None | RC1029 |
| RT0742 | Unknown | 941930 | 942133 | None | Rickettsial conserved hypothetical protein | None | RC1172 |
| RT0872 | Unknown | 1104639 | 1104791 | None | Rickettsial conserved hypothetical protein | None | RC1362 |
| R. typhi ORFs found in R. prowazekii but not in R. conorii | |||||||
| RT0026 | Energy metabolism | 27080 | 28237 | ackA | Acetate kinase | RP110 | None |
| RT0033 | Virulence | 44546 | 46963 | virB4a | VirB4 protein precursor | RP103 | None |
| RT0035 | Unknown | 48098 | 48742 | engB | Probable GTP-binding protein EngB | RP102 | None |
| RT0156 | Unknown | 196185 | 196379 | None | Rickettsial conserved hypothetical protein | RP164 | None |
| RT0160 | Unknown | 199110 | 199382 | None | Rickettsial conserved hypothetical protein | RP169 | None |
| RT0268 | Unknown | 337676 | 338362 | None | Rickettsial conserved hypothetical protein | RP277 | None |
| RT0269 | Unknown | 338385 | 339527 | None | Rickettsial conserved hypothetical protein | RP278 | None |
| RT0325 | Unknown | 412632 | 413753 | None | Rickettsial conserved hypothetical protein | RP335 | None |
| RT0326 | General metabolism | 413782 | 415005 | None | Probable glycosyltransferase | RP337 | None |
| RT0327 | Unknown | 415002 | 416213 | None | Possible glycosyltransferase | RP337 | None |
| RT0328 | Unknown | 416200 | 417237 | None | Conserved hypothetical protein | RP338 | None |
| RT0330 | Virulence | 418166 | 419182 | None | WaaG-like sugar transferase | RP340 | None |
| RT0341 | Unknown | 434960 | 435208 | None | Conserved hypothetical protein | RP351a | None |
| RT0362 | Virulence | 458514 | 459878 | None | Sec7-domain containing protein transport protein | RP374 | None |
| RT0426 | Unknown | 535490 | 536665 | None | Rickettsial conserved hypothetical protein | RP439 | None |
| RT0463 | Virulence | 593138 | 594691 | None | Possible lipopolysaccharide 1,2-glucosyltransferase WaaJ | RP476 | None |
| RT0549 | Transport | 710632 | 710895 | None | Possible Na+/H+ antiporter | RP561a | None |
| RT0615 | Regulation | 804351 | 805103 | spoTb | Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase SpoTb | PG624 | None |
| RT0616 | Regulation | 805109 | 805450 | spoTc | Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase SpoTc | PG625 | None |
| RT0710 | Unknown | 907724 | 908002 | None | Rickettsial conserved hypothetical protein | RP723 | None |
| RT0764 | Central dogma | 968047 | 969195 | metK | Methionine adenosyltransferase | RP777 | None |
| RT0793 | Unknown | 1012772 | 1013206 | None | Conserved hypothetical protein | RP806 | None |
| RT0808 | General metabolism | 1027687 | 1029441 | phbC | Poly-β-hydroxybutyrate polymerase | RP820 | None |