Table 2.
List of the top 15 pregnancy-enriched pouch tissue genes
| Gene ID | Fold change | CPM | p value | Gene description | KO ID |
|---|---|---|---|---|---|
| SSCG00000006913 | 15.66 | 7.22 | 2.13E-24 | WNT1-inducible-signaling pathway protein 2 isoform X2 | K06827 |
| SSCG00000005974 | 21.04 | 6869.88 | 1.87E-18 | patristacin, partial | K08778 |
| SSCG00000007802 | 4.15 | 93.44 | 7.69E-16 | podocan | |
| SSCG00000014514 | 3.15 | 46.38 | 1.45E-15 | fos-related antigen 2-like | |
| SSCG00000015977 | 12.38 | 229.24 | 1.39E-14 | myocilin-like | |
| SSCG00000006209 | 6.53 | 4.72 | 4.91E-14 | dickkopf-related protein 2 | K02165 |
| SSCG00000007875 | 2.93 | 188.72 | 8.81E-14 | neuroepithelial cell-transforming gene 1 protein | |
| SSCG00000013720 | 5.13 | 233.89 | 3.85E-13 | lipopolysaccharide-binding protein/bactericidal permeability-increasing protein | |
| SSCG00000011252 | 2.88 | 72.11 | 2.72E-12 | beta-galactoside alpha-2,6-sialyltransferase 1-like isoform X1 | K00778 |
| SSCG00000004944 | 6.64 | 29.73 | 7.33E-12 | collagen alpha-2(VI) chain-like | K06238 |
| SSCG00000006480 | 3.10 | 18.93 | 1.81E-11 | CTTNBP2 N-terminal-like protein | |
| SSCG00000013244 | 2.30 | 34.04 | 2.10E-11 | LIM domain transcription factor LMO4-B-like | |
| SSCG00000004636 | 3.22 | 386.88 | 3.62E-11 | NA | |
| SSCG00000002072 | 29.24 | 1.59 | 3.77E-11 | potassium channel subfamily K member 2-like | K04913 |
| SSCG00000007792 | 5.21 | 7.06 | 4.20E-11 | excitatory amino acid transporter 5-like | K05618 |
Included are the fold change (pregnant/non-pregnant), average expression level across 12 pouch libraries in copies per million (CPM), edgeR negative binomial exact test p value, gene description from top BLASTP hit, and the assigned KEGG orthology ID for each pipefish gene. See Additional file 2 SH2 for the full list