Table 1.
Summary statistics and information on the genome and the isolation of the 31 Bacillus genomes in this study.
| Species | Subspeciesa | Strain | Genome size (Mbp) | 16S rRNA operons | Substrate | Country | Reference | NCBI Accession No. |
|---|---|---|---|---|---|---|---|---|
| B. amyloliquefaciens | plantarum | NJN-6 | 4.05 | 8 | Musa sp. rhizosphere | China | This study | NZ_CP007165/CP007165 |
| LFB112 | 3.94 | 9 | Chinese herbs | Cai et al., 2014 | NC_023073/CP006952 | |||
| Y2b | 4.24 | 10 | Triticum spp. rhizosphere | He et al., 2012 | NC_017912/CP003332 | |||
| CAU B946 | 4.02 | 10 | Oryza sativa rhizosphere | Blom et al., 2012 | NC_016784/HE617159 | |||
| NAU-B3 | 4.2 | 11 | Triticum spp. rhizosphere | Wu et al., 2013 | NC_022530/HG514499 | |||
| YAU B9601-Y2b | 4.24 | 10 | Triticum spp. rhizosphere | He et al., 2012 | NC_017061/HE774679 | |||
| SQR9 | 4.12 | 7 | Cucumis sativus rhizosphere | Zhang et al., 2015 | NZ_CP006890/CP006890 | |||
| CC178 | 3.92 | 9 | Cucumis sativus phyllosphere | Korea | Kim et al., 2015 | NC_022653/CP006845 | ||
| AS 43.3 | 3.96 | 10 | Triticum spp. head | USA | Dunlap et al., 2013 | NC_019842/CP003838 | ||
| UCMB5033 | 4.07 | 10 | Gossypium sp. | Tajikistan | Niazi et al., 2014 | NC_022075/HG328253 | ||
| UCMB5036 | 3.91 | 9 | Gossypium sp. endophyte | Manzoor et al., 2013 | NC_020410/HF563562 | |||
| UCMB5113 | 3.89 | 9 | Soil | Ukraine | Niazi et al., 2014 | NC_022081/HG328254 | ||
| FZB42T | 3.92 | 10 | Sugar beet field | Germany | Chen et al., 2007 | NC_009725/CP000560 | ||
| n.a. | IT-45 | 3.93 | 10 | n.a. | n.a. | CP004065 | NC_020272/CP004065 | |
| amyloliquefaciens | DSM7T | 3.98 | 10 | n.a. | Germany | Rückert et al., 2011 | NC_014551/FN597644 | |
| LL3 | 4 | 7 | Korean bibimbap | Korea | Geng et al., 2011 | NC_017190/CP002634 | ||
| TA208 | 3.94 | 7 | Soil | China | Zhang et al., 2011 | NC_017188/CP002627 | ||
| XH7 | 3.94 | 7 | n.a. | Yang et al., 2011 | NC_017191/CP002927 | |||
| B. subtilis | n.a. | HJ5 | 4.01 | 7 | Gossypium sp. rhizosphere | China | This study | NZ_CP007173/CP007173 |
| subtilis | BAB-1 | 4.02 | 11 | Gossypium sp. rhizosphere | Guo et al., 2014 | NC_020832/CP004405 | ||
| n.a. | XF-1 | 4.06 | 10 | Brassica rapa rhizosphere | Guo et al., 2013 | NC_020244/CP004019 | ||
| n.a. | BSn5 | 4.09 | 11 | Amorphophallus konjac tissue | Deng et al., 2011 | NC_014976/CP002468 | ||
| subtilis | 168 | 4.22 | 10 | n.a | USA | Kunst et al., 1997 | NC_000964/AL009126 | |
| subtilis | ATCC 6051 | 4.22 | 10 | n.a. | Kabisch et al., 2013 | NC_020507/CP003329 | ||
| n.a. | PY79 | 4.03 | 10 | n.a. | Schroeder and Simmons, 2013 | NC_022898/CP006881 | ||
| subtilis | RO-NN-1 | 4.01 | 10 | Desert soil | Earl et al., 2012 | NC_017195/CP002906 | ||
| subtilis | BSP1 | 4.04 | 10 | Poultry | Switzerland | Schyns et al., 2013 | NC_019896/CP003695 | |
| n.a. | QB928 | 4.15 | 10 | n.a. | n.a. | Yu et al., 2012 | NC_018520/CP003783 | |
| natto | BEST195 | 4.09 | 10 | Miyagino-based natto | Japan | Kamada et al., 2014 | NC_017196 | |
| spizizenii | TU-B-10T | 4.21 | 10 | Soil | Tunisia | Earl et al., 2012 | NC_016047/CP002905 | |
| W23 | 4.03 | 8 | n.a. | n.a. | Zeigler, 2011 | NC_014479/CP002183 |
n.a. not available
a
Based on the information from NCBI (http://www.ncbi.nlm.nih.gov).
b
These two strains are exactly the same strain which have been independent sequenced and annotated by different laboratories.