Table 4. Summary of annotation against the domain/family databases queried with InterProScan.

DATABASE	Number of contigs with a match	contigs %	Protein domain/family
Gene3D	13,239	16.7	1,032
Hamap	305	0.38	195
InterPro	20,244	25.55	5,772
PANTHER	21,867	27.6	12,129
Pfam	18,064	22.8	3,502
PIRSF	670	0.85	356
PRINTS	2,225	2.81	397
PRINTS	212	0.27	86
ProSitePatterns	3,264	4.12	588
ProSiteProfiles	7,504	9.47	550
SMART	5,177	6.53	507
SUPERFAMILY	13,933	17.58	907
TIGRFAM	2,018	2.55	608