Table 2.
List of primers used for in vitro cleavage assay and targeted deep sequencing.
Target | Sequence (5′-3′) |
---|---|
MLO-7 in vitro cleavage assay | F; GCAGTGGTTAAAAGGCAGAC R; CTTGGTTCTTCCCAAAGCC |
MLO-7 deep sequencing | F; CCAAAGGTCTAACCCTTTTC R; GGGAAACACCTTTTTCAGTC |
DIPM-1 in vitro cleavage assay | For RG1 – RG6 F; TTTTAATCTTCAACGTCTCC R; TTGCCTGAAAATAAGCCCTC |
For RG7 and RG8 F; TAGTAACCAAAGGGAAGTGG R; TTCAACACTTGCCACATTGC |
|
DIPM-1 deep sequencing | F; GTCTTATGCCTCTTTGCGG R; CTCCAGACTGTATAGCTGAG |
DIPM-2 in vitro cleavage assay | For RG1 F; TGCACAAATAACCGAGTCTC R; ACTATGATGGCGATTAGAGC |
For RG2 to RG5 F; CAAGGGTACATCAAACGACC R; AAATTTACCGTGGAGAACCC |
|
For RG6 F; ACATCCTCTTAGACAAGACC R; AGCACAAACGAAAACGAGAG |
|
DIPM-2 deep sequencing | F; CGCTGCTCCTGTACTGCTAC R; GTCGAGCACCGCCTTGTA |
DIPM-4 in vitro cleavage assay | For RG1 F; AGAAAAACAAGCCTTTCGCG R; TCCGTACAATTCGTTGTTGG |
For RG2 to RG6 F; CACCAACAACGAATTGTACGG R; AGTAATAAGCACTCAGCCTC |
|
For RG7 F; TGCAGTTTGAGTCTAATGCG R; CCTCAATGTTCTTGTACCTC |
|
DIPM-4 deep sequencing | F; GATGTAATTAAGGGAATCGG R; CAATCTTGCAATGGCGTGAA |