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. 2016 Dec 16;7:13783. doi: 10.1038/ncomms13783

Figure 3. Capp-Switch reads start at specific genome positions corresponding to putative TSS.

Figure 3

The number of reads starting at each genome position are shown for Capp-Switch (a–d) and RNA-seq (e–h). The cphy2876 gapdh gene (a,e) has a single TSS (glucose data shown). The cphy3558 pfor gene (b,f) has an upstream TSS and an intragenic sense TSS (glucose data shown). The cphy3202 cel5A cellulase gene (c,g) has three TSS during growth on cellulose. The cphy1510 xylanase gene (d,h) is expressed from three TSS on xylan (red bars) and a single, upstream TSS on pectin (purple). Plots show the number of reads starting at each genome position with forward strand reads on the positive Y axis and reverse strand reads on the negative Y axis. Distance to the start codon is shown at the base of TSS peaks.