Table 4.
LYP9 Genes Mostly Differentially Expressed between Tillering (Lib 3) and Trefoil (Lib 2) Stages
| MasterContig Name | BLASTN Annotation | BLASTX Annotation | Change Folds | Chi-sqare Test |
|---|---|---|---|---|
| Contig13767 | Zea mays chloroplast rRNA-operon | Unkown | 0.10 | 6.34E-15 |
| Contig13718 Contig13638 Contig12674 |
Oryza sativa mRNA for ferredoxin, complete cds | (P00228) Ferredoxin, chloroplast precursor | 9.24 | 3.57E-13 |
| Contig13727 Contig12420 rsiced_10341.y1.abd rsiced_4570.y1.abd |
Hordeum vulgare chloroplast photosystem I PSK-I subunit mRNA, complete cds | (P36886) Photosystem I reaction center subunit X, chloropla | 8.56 | 1.00E-10 |
| Contig27 Contig13694 rsiced_11896.y1.abd Contig5628 rsiced_3479.y1.abd |
Unkown | Unkown | 15.73 | 2.84E-10 |
| Contig6621 Contig13700 | Oryza sativa mRNA for ribonuclease, complete cds | Unkown | 0.05 | 7.59E-09 |
| Contig13904 | Unkown | (Q40070) Photosystem II 10 kDa polypeptide, chloroplast pre | 10.84 | 8.03E-09 |
| Contig13906 | Oryza sativa Zn-induced protein (RezA) mRNA, complete cds | Unkown | 0.03 | 3.20E-08 |
| Contig13913 | Oryza sativa 25S ribosomal RNA gene | Unkown | 0.06 | 8.52E-08 |
| Contig13751 | Oryza sativa chloroplast carbonic anhydrase mRNA, complete cds | (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.) | 4.98 | 8.85E-08 |
| Contig13911 | Oryza sativa chlorophyll a/b binding protein (kcdl895) mRNA, complete cds | (P06671) Chlorophyll A-B binding protein, chloroplast pre | 11.90 | 9.67E-08 |
| Contig13920 | Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds | (P93431) Ribulose bisphosphate carboxylase/oxygenase activa | 7.23 | 1.00E-07 |
| Contig13704 | Oryza sativa Zn-induced protein (RezA) mRNA, complete cds | Unkown | 0.11 | 1.42E-07 |
| Contig13901 | Oryza sativa mRNA for the small subunit of ribulose-1,5-bisphosphate carboxylase, complete cds, clone pOSSS1139 | (P18567) Ribulose bisphosphate carboxylase small chain C | 22.95 | 3.23E-06 |
| Contig13546 Contig7253 rsiced_4290.y1.abd |
Oryza sativa mRNA for precursor of 22 kDa protein of photosystem II (PSII-S), complete cds | (P54773) Photosystem II 22 kDa protein, chloroplast pre | 12.75 | 4.24E-06 |
| Contig12144 Contig13905 rsiceg_15548.y1.abd |
Oryza sativa chlorophyll a-b binding protein mRNA, complete cds | (P27523) Chlorophyll A-B binding protein of LHCII type III | 7.65 | 4.82E-06 |
| Contig13926 | Oryza sativa chlorophyll a/b binding protein (RCABP89) mRNA, nuclear gene encoding chloroplast protein, complete cds | (P27519) Chlorophyll A-B binding protein, chloroplast pre | 2.59 | 5.92E-06 |
| Contig13723 Contig150 rsicee_817.y1.abd |
Unkown | Unkown | 0.09 | 7.37E-06 |
| Contig13715 Contig1541 | Unkown | (P27522) Chlorophyll A-B binding protein 8, chloroplast pre | 5.74 | 7.54E-06 |
| Contig13576 | Oryza sativa mRNA for RicMT, complete cds | Unkown | 12.11 | 8.20E-06 |
| Contig13914 | Oryza sativa light-induced mRNA | (Q03200) Light regulated protein precursor | 0.19 | 9.04E-06 |
| Contig4926 Contig13475 siced_4355.z1.abd |
Oryza sativa RNase S-like protein mRNA, complete cds | (P42815) Ribonuclease 3 precursor (EC 3.1.27.1) | 7.33 | 9.11E-06 |
| Contig13604 | Oryza sativa mRNA for RicMT, complete cds | Unkown | 7.33 | 9.11E-06 |
| Contig727 Contig9659 Contig12248 Contig13927 Contig10986 |
Oryza sativa chlorophyll a/b binding protein (kcdl895) mRNA, complete cds | (P06671) Chlorophyll A-B binding protein, chloroplast pre | 2.98 | 9.64E-06 |