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. 2016 Nov 15;1:4. [Version 1] doi: 10.12688/wellcomeopenres.9876.1

Table 1. Features of the new P. vivax assemblies against Salvador-I.

Genome features PvP01 a PvC01 PvT01 Salvador-I b
Nuclear genome
Assembly size (Mb) 29.0 30.2 28.9 26.8
Coverage (fold) 212 56 89 10
G + C content (%) 39.8 39.2 39.7 42.3
No. scaffolds
assigned to chrom.
14 14 14 30
No. unassigned
scaffolds
226 529 359 2745
No. genes c 6,642 6,690 6,464 5,433
No. pir genes 1,212 1,061 867 346
Mitochondrial genome d
Assembly size (bp) 5,989 - - 5,990
G + C content (%) 30.5 - - 30.5
Apicoplast genome
Assembly size (kb) 29.6 27.6 e 6.6 f 5.1 g
G + C content (%) 13.3 12.7 19.7 17.1
No. genes 30 3 0 0

a Genome version 1.09.2016

b Published reference sequence 14

c Including pseudogenes and partial genes, excluding non-coding RNA genes.

d Mitochdondrial genome is not present in PvT01 and PvC01

e scaffold PvC01_00_191

f scaffold PvT01_00_162

g Partial apicoplast sequence of Salavador-I reference assembly has been published (scaffolds AAKM01000417, AAKM01000371)