Table 3.
Estimation of actual numbers and rates of single base substitution (SBS), insertion/deletion (Indel), structural variation (SV), and copy number variation (CNV) mutations in the six P2M2 plants based on the number of mutations identified by next-generation sequencing (NGS) and bioinformatics analysis, and the validation rates
| P2M2 plant | SBS |
Indel |
SV |
CNV |
Total |
||||||
| No. | Rate (×10−6) | No. in non-repetitive sequence | No. in repetitive sequence | Rate (×10−6) | No. | Rate (×10−6) | No. | Rate (×10−6) | No. | Rate (×10−6) | |
| 165-MS | 2443 | 6.64 | 202 | 225 | 1.14 | 87 | 0.23 | 523 | 1.40 | 3480 | 9.32 |
| 165-NP | 2936 | 7.92 | 238 | 218 | 1.22 | 64 | 0.17 | 149 | 0.40 | 3606 | 9.66 |
| 246-MS | 2578 | 7.00 | 203 | 233 | 1.17 | 69 | 0.19 | 505 | 1.35 | 3588 | 9.61 |
| 246-NP | 2924 | 7.83 | 216 | 235 | 1.21 | 62 | 0.17 | 218 | 0.58 | 3654 | 9.79 |
| 389-MS | 1762 | 4.72 | 242 | 217 | 1.23 | 89 | 0.24 | 497 | 1.33 | 2807 | 7.52 |
| 389-NP | 1869 | 5.05 | 253 | 233 | 1.30 | 43 | 0.11 | 408 | 1.09 | 2806 | 7.52 |