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Pfam motifs retained for the classification.
| General Motifs | Copia Motifs | Gypsy Motifs | |
|---|---|---|---|
| DUF4283 | DUF4219 | Asp_protease | RVP_2 |
| RNase_H | gag_pre_integrase | Asp_protease_2 | RVT_1 |
| rve | RVT_2 | ATHILA | RVT_3 |
| rve_3 | UBN2 | Chromo | Transposase_28 |
| RVP | UBN2_2 | DUF390 | Zf-CCHC_4 |
| zf-CCHC | UBN2_3 | gag-asp_protease | Zf-RVT |
Note. #houba–>Copia UBN2_2-410..524-3 zf-CCHC-569..586-3 gag_pre-integrs-735..803-3 rve-817..932-3 RVT_2-1149..1392-3
