TABLE 2.
P. aeruginosa AlgU (σE) promoter consensus sequence in front of the lpt genes
| Gene category and no. | Gene name | AlgU consensusa | Distance (bp) from initiation codon |
|---|---|---|---|
| Lpt-encoding genes with AlgU promoter consensus sequence | |||
| PA0737 | lptD | TCGAACTGGATCCGTTCGACGATGGCTACTACGGCT | 155 |
| PA1323 | Unknown | CTGAACTTTTTCACTGCGGCGCCTATCAACTCCTTT | 30 |
| PA5526 | lptG | AAGAATTTCCCTCGATTGCGACGGTCACAAGGGCAA | 55 |
| PA1592 | lptA | TGGAACTTCACGCCAGCGCAAATGTTCAAAGGGCTA | 35 |
| PA3262 | lptB | TTGAACTTATCCGCGCGCACCTGTTCCTATTGCCCA | 82 |
| PA3819 | slyB | TGGAACTTGGTGGTTTTTGCCCAGTCCTAGGCAAGG | 60 |
| PA4876 | osmE | GCGAACTCTGCGCGAGGGCCTGCGTTCCAATGTTCG | 37 |
| Lpt-encoding genes with no discernible AlgU promoter consensus sequence | |||
| PA0062 | lptC | ||
| PA3691 | lptE |
a
The AlgU consensus sequence was GAACTT-(16 or 17 bp)-TCCAA-(5 or 6 bp). The consensus matches are shown in bold; underscored residues map mRNA 5′ ends.