Table 2.
Transcriptome assembly statistics for the examined flax cultivars.
| Hermes | TMP1919 | Lira | Orshanskiy | |
|---|---|---|---|---|
| Genes | 74,985 | 72,285 | 75,121 | 75,028 |
| Transcripts | 123,953 | 124,071 | 122,572 | 126,408 |
| GC-content | 45 | 44 | 45 | 44 |
| N50 | 1861 | 1838 | 1871 | 1857 |
| Median contig length | 765 | 767 | 757 | 761 |
| Average contig length | 1148 | 1142 | 1150 | 1150 |
| Total assembled bases, Mb | 143.5 | 141.7 | 141.0 | 145.2 |
| Transcripts with found ORF | 85,706 | 84,438 | 86,698 | 85,078 |
| Transcripts mapped to UniProt (BLASTx) | 75,222 | 73,921 | 75,526 | 74,936 |
| Transcripts with ORF mapped to UniProt (BLASTp) | 41,321 | 40,712 | 41,408 | 40,631 |
| Transcripts with ORF mapped to PFAM (HMMER) | 39,677 | 39,027 | 39,327 | 39,422 |
| Transcripts annotated with KEGG | 38,989 | 38,558 | 38,843 | 38,931 |
| Transcripts annotated with Gene Ontology (BLAST) | 45,366 | 45,572 | 45,597 | 45,339 |
| Transcripts annotated with Gene Ontology (PFAM) | 24,488 | 25,256 | 24,924 | 24,901 |