TABLE 2.
Mean fold downregulation of genes on the cDNA array by use of three separate RNA isolations
| Downregulation (fold) | Gene description | Replicon | Gene family |
|---|---|---|---|
| −2.0 | BBS33 conserved hypothetical protein | cp32-3 | 57 |
| −2.0 | BBO01 hypothetical protein | cp32-7 | 146 |
| −2.0 | BB0562 hypothetical protein | Chromosome | 35 |
| −2.0 | BBG18 hypothetical protein | lp28-2 | |
| −2.0 | BB0335 ABC transporter, ATP-binding protein (OppF) | Chromosome | 4 |
| −2.0 | BBK22 conserved hypothetical protein | lp36 | 50 |
| −2.0 | BB116 hypothetical protein | lp28-4 | 60 |
| −2.0 | BBR31 conserved hypothetical protein | cp32-4 | 57 |
| −2.0 | BBB10 conserved hypothetical protein | cp26 | 62 |
| −2.1 | BBG06 conserved hypothetical protein | lp28-2 | 57 |
| −2.1 | BBQ51 hypothetical protein, authentic frameshift | lp56 | 146 |
| −2.1 | BB0367 hypothetical protein | Chromosome | |
| −2.1 | BBF10 hypothetical protein | lp28-1 | 70 |
| −2.1 | BBR34 conserved hypothetical protein | cp32-4 | 49 |
| −2.1 | BB119 conserved hypothetical protein | lp28-4 | 57 |
| −2.1 | BBS01 hypothetical protein | cp32-3 | 146 |
| −2.1 | BBH29 conserved hypothetical protein | lp28-3 | 49 |
| −2.1 | BBH14 hypothetical protein | lp28-3 | |
| −2.1 | BB107 hypothetical protein | lp28-4 | |
| −2.2 | BBH12 hypothetical protein | lp28-3 | |
| −2.2 | BBJ08 hypothetical protein | lp38 | 12 |
| −2.2 | BBF24 plasmid partition protein, putative | lp28-1 | 32 |
| −2.2 | BB0242 hypothetical protein | Chromosome | |
| −2.2 | BB0365 lipoprotein LA7 | Chromosome | |
| −2.2 | BBD18 hypothetical protein | lp17 | |
| −2.2 | BBK23 hypothetical protein | lp36 | 62 |
| −2.2 | BB0261 hypothetical protein | Chromosome | |
| −2.3 | BBO30 conserved hypothetical protein | cp32-7 | 57 |
| −2.3 | BB0396 ribosomal protein L33 (RpmG) | Chromosome | |
| −2.3 | BB0256 ribosomal protein S21 (RpsU) | Chromosome | |
| −2.3 | BBK01 hypothetical protein | lp36 | 12 |
| −2.3 | BBM33 conserved hypothetical protein | cp32-6 | 49 |
| −2.3 | BBL01 hypothetical protein | cp32-8 | 146 |
| −2.3 | BB0034 hypothetical protein | Chromosome | 48 |
| −2.3 | BB0631 hypothetical protein | Chromosome | |
| −2.3 | BBP30 conserved hypothetical protein | cp32-1 | 57 |
| −2.4 | BB0324 hypothetical protein | Chromosome | |
| −2.4 | BB0083 hypothetical protein | Chromosome | |
| −2.4 | BB0425 hypothetical protein | Chromosome | |
| −2.4 | BBH37 hypothetical protein | lp28-3 | 12 |
| −2.4 | BB0428 hypothetical protein | Chromosome | |
| −2.5 | BB0403 hypothetical protein | Chromosome | |
| −2.5 | BBA42 conserved hypothetical protein | lp54 | 150 |
| −2.6 | BBD05.1 conserved hypothetical protein, pseudogene | lp17 | 57 |
| −2.6 | BB0356 hypothetical protein | Chromosome | |
| −2.6 | BBJ19 conserved hypothetical protein | lp38 | 62 |
| −2.6 | BB0785 stage V sporulation protein G | Chromosome | |
| −2.6 | BBH09.1 conserved hypothetical protein, pseudogene | lp28-3 | 95 |
| −2.7 | BBA52 outer membrane protein | lp54 | |
| −2.8 | BBG04 hypothetical protein | lp28-2 | |
| −2.8 | BBH18.1 conserved hypothetical protein, pseudogene | lp28-3 | 65 |
| −2.8 | BBD14 conserved hypothetical protein | lp17 | 62 |
| −2.9 | BBA23 conserved hypothetical protein | lp54 | 144 |
| −2.9 | BBA74 outer membrane porin (Oms28) | lp54 | 171 |
| −2.9 | BBE30 hypothetical protein | lp25 | 49 |
| −2.9 | BBH26 hypothetical protein | lp28-3 | 62 |
| −3.0 | BB0049 hypothetical protein | Chromosome | |
| −3.2 | BBA60 surface lipoprotein P27 | lp54 | |
| −3.3 | BBF32 recombination cassettes Vls2-Vls16, authentic frameshift | lp28-1 | 170 |
| −3.3 | BBG15 hypothetical protein | lp28-2 | |
| −3.6 | BBA59 lipoprotein | lp54 | |
| −3.7 | BBJ41 antigen, P35, putative | lp38 | 54 |
| −3.8 | BB136 antigen, P35, putative | lp28-4 | 54 |
| −3.8 | BBA62 lipoprotein | lp54 | |
| −3.8 | BBH16 hypothetical protein | lp28-3 | |
| −3.8 | BBI39 hypothetical protein | lp28-4 | 54 |
| −4.0 | BBH20 outer membrane porin, authentic frameshift (Oms28) | lp28-3 | 171 |
| −4.0 | BBI13 conserved hypothetical protein | lp28-4 | |
| −4.0 | BBA63 hypothetical protein | lp54 | |
| −4.1 | BBA03 outer membrane protein | lp54 | |
| −4.1 | BBD13 hypothetical protein | lp17 | |
| −4.3 | BB0519 grpE protein (GrpE) | Chromosome | |
| −4.5 | BB103 hypothetical protein | lp28-4 | |
| −4.5 | BB0229 ribosomal protein L31 (RpmE) | Chromosome | |
| −4.6 | BB0395 preprotein translocase subunit (SecE) | Chromosome | |
| −5.9 | BB102 conserved hypothetical protein | lp28-4 | 84 |
| −6.7 | BBJ09 outer surface protein D (OspD) | lp38 | |
| −7.2 | BB0187 hypothetical protein | Chromosome | |
| −8.1 | BB0273 flagellar biosynthesis protein (FliR) | Chromosome |