Table 2.
Repetitive Element Counts and Base-Pair Coverage for the Salp Genome
| Type of element | Count | Total base pairs | Percent of genome |
|---|---|---|---|
| SINEs | 45,324 | 2,935,478 | 0.92 |
| ALUs | 39 | 3,429 | 0 |
| LINEs | 136,014 | 14,682,786 | 4.61 |
| LINE1 | 230 | 32,570 | 0.01 |
| LINE2 | 6,222 | 818,015 | 0.26 |
| L3/CR1 | 13,793 | 1,676,529 | 0.53 |
| LTR elements | 113,301 | 8,988,469 | 2.82 |
| ERV_class I | 53 | 5,784 | 0 |
| DNA elements | 649,419 | 56,060,847 | 17.59 |
| hAT-Charlie | 8,128 | 889,239 | 0.28 |
| TcMar-Tigger | 215 | 30,504 | 0.01 |
| Unclassified | 280,392 | 20,865,094 | 6.55 |
| Total interspersed repeats | 103,532,674 | 32.48 | |
| Small RNAs | 511 | 49,308 | 0.02 |
| Satellites | 404 | 72,054 | 0.02 |
| Simple repeats | 64,031 | 2,454,620 | 0.77 |
| Low complexity | 10,916 | 502,724 | 0.16 |
| Total repeat content | 105,389,055 | 33.45 | |