Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2016 Aug 9;44(20):e154. doi: 10.1093/nar/gkw695

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

PMC Copyright notice

Figure 5. — Analysis on somatic data set. A total of 14 WES tumour/control samples pairs of Urothelial Bladder cancer were analysed using EXCAVATOR2 and CopywriteR, and results were compared to the SNP-array genotyping. Copy number profiles for the chromosome 5 of patient 251 with segmentation values depicted in red are shown for (A) SNP-array, (B) EXCAVATOR2 and (C) CopywriteR. MAD values for all 14 samples pairs are represented in (D). Table (E) shows the Spearman correlation coefficient values for different CNV sizes between the array-based profiles and those resulting from EXCAVATOR2 and CopywriteR. Finally, the ‘zoomed’ in region containing a potential deletion in the chromosome 5 of the patient 64 is showed with CN profiles and calls from (F) SNP-array, (G) EXCAVATOR2 and (H) CopywriteR.