Table 1. Steady-state kinetic analysis of single nucleotide incorporation primer extension opposite C or 5mC by KOD exo- DNA polymerase wt and G245D.
dNTP | enzyme | template | KM [μM] | kcat [s−1] | kcat/KM [s−1 μM−1] |
---|---|---|---|---|---|
dGTP | wt | C | 4.0 ± 0.3 | 5.9 ± 0.1 | 1.5 ± 0.1 |
5mC | 3.3 ± 0.3 | 3.5 ± 0.1 | 1.1 ± 0.6 | ||
dGTP | G245D | C | 9.2 ± 2.2 | 7 ± 0.9 | 0.76 ± 0.1 |
5mC | 9.6 ± 1.9 | 2.7 ± 0.3 | 0.28 ± 0.41 | ||
2 | G245D | C | 344.0 ± 49.6 | 2.42 ± 0.22 | 0.0070 ± 0.0006 |
5mC | 203.8 ± 32.2 | 0.585 ± 0.043 | 0.0029 ± 0.0002 |
Ratios calculated by the quotient of kcat (C)/kcat(5mC) and kcat/KM (C) and kcat/KM (5mC), respectively.