Table 7. For each taxon in the leftmost column, this table shows the five most useful organisms for prediction of ADD, as determined by three different ranking methods: F-value, a decision tree based approach, and mutual information.
Feature Ranking | |||
---|---|---|---|
F-value* | Tree | Mutual Information | |
Phylum | armatimonadetes | verrucomicrobia | actinobacteria |
planctomycetes | armatimonadetes | spirochaetes | |
verrucomicrobia | actinobacteria | armatimonadetes | |
actinobacteria | planctomycetes | firmicutes† | |
cyanobacteria | thermodesulfobacteria† | cyanobacteria† | |
Class | thermoleophilia | erysipelotrichi | actinobacteria |
erysipelotrichi | clostridia | verrucomicrobiae | |
fimbriimonadetes | acidimicrobiia | leptospirae | |
planctomycetia | alphaproteobacteria | bacilli | |
spartobacteria | solibactereres | thermoleophilia | |
Order | solirubrobacterales | clostridiales | lactobacillales† |
rhodospirillales | erysipelotrichales | lactobacillales | |
caulobacterales | myxococcales | thiotrichales | |
myxococcales | xanthomonadales | bacillales | |
erysipelotrichales | chthoniobacterales | leptospirales | |
Family | nocardioidaceae | staphylococcaceae | enterococcaceae |
bradyrhizobiaceae | planococcaceae | staphylococcaceae | |
solirubrobacteraceae | enterococcaceae | streptosporangiaceae† | |
caulobacteraceae | pseudomonadaceae | planococcaceae | |
acetobacteraceae | veillonellaceae | prevotellaceae | |
Genus | caulobacter | staphylococcus | macrococcus |
acidisphaera | peptoniphilus | vagococcus | |
phenylobacterium | vagococcus | symploca† | |
dactylosporangium | pseudonocardia | staphylococcus | |
nocardioides | oenococcus | pelomonas | |
Species | virgibacillus salexigens | staph. caprae | actin. rutila |
staph. fleurettii | sporosarcina pasteurii | staph. intermedius | |
dactylosporangium maewongense | strep. tigurinus | marinomonas basaltis | |
roseomonas terpenica | enterococcus rottae | staph. devriesei | |
nocardioides islandensis | staph. epidermidis | propion. granulosum |
† located in the nose
* ranked by p-value