Skip to main content
. 2016 Dec 14;18(1):44–57. doi: 10.1111/tra.12457

Table 1.

Crystallographic data collection and refinement. Values for the highest resolution shell are shown in parentheses

NTD: AP2CBMpep AmphCBMpep Amph4T1pep HDAg‐L1pep HDAg‐L2pep
Data collection
Space group C2221 C2 C2 C2 C2
Cell dimensions
a, b, c (Å) 108.1, 133.2, 77.9 140.0, 134.1, 78.0 137.8, 131.0, 79.1 136.2, 131.2, 77.9 136.9, 131.2, 78.5
α, β, γ (°) 90.0, 90.0, 90.0 90.0, 115.1, 90.0 90.0, 116.2, 90.0 90.0, 115.6, 90.0 90.0, 115.9, 90.0
Resolution (Å) 57.1–1.8 (1.81–1.76) 67.1–1.9 (1.93–1.88) 33.6–1.7 (1.74–1.70) 48.4–2.2 (2.21–2.15) 39.2–2.0 (2.00–1.96)
R merge 0.053 (1.538) 0.149 (1.092) 0.055 (0.751) 0.101 (0.930) 0.081 (0.581)
< I/σI> 15.8 (1.2) 6.5 (1.3) 13.1 (1.6) 9.6 (1.5) 7.2 (1.5)
CC1/2 1.000 (0.672) 0.993 (0.568) 0.999 (0.564) 0.996 (0.501) 0.996 (0.563)
Completeness (%) 100.0 (100.0) 100.0 (100.0) 98.2 (94.5) 99.7 (99.0) 94.6 (95.9)
Redundancy 7.5 (7.0) 5.1 (4.4) 3.9 (3.4) 4.5 (4.3) 2.5 (2.3)
Refinement
Resolution (Å) 57.1–1.8 (1.81–1.76) 67.1–1.9 (1.93–1.88) 33.6–1.7 (1.74–1.70) 48.4–2.2 (2.21–2.15) 39.2–2.0 (2.01–1.96)
No. of reflections (work/free) 52,951/2740 99,868/5291 128,743/6564 63,339/3381 79,976/4224
R work/R free 0.176/0.205 0.204/0.234 0.158/0.185 0.175/0.207 0.169/0.193
Ramachandran favoured regions (%) 98.7 98.6 98.8 98.2 99.1
Ramachandran outliers (%) 0.0 0.0 0.0 0.0 0.0
No. of atoms
Protein 2836 5845 5796 5634 5634
Glycerol 18 6 6 6
Peptide ligands 104 268 340 200 240
Water 403 803 1019 437 583
B‐factors
Protein 36.1 22.0 26.2 39.8 32.0
Glycerol 36.5 21.8 32.7 20.9
Peptide ligands 52.4 45.1 48.7 70.2 61.0
Water 53.5 37.8 42.3 45.6 38.2
r.m.s. deviations
Bond lengths (Å) 0.016 0.010 0.014 0.020 0.019
Bond angles (°) 1.719 1.396 1.619 1.897 1.917
PDB ID 5M5R 5M5S 5M5T 5M5U 5M5V

Abbreviations: NTD, N‐terminal domain; PDB, Protein data bank.