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. Author manuscript; available in PMC: 2018 Jan 1.
Published in final edited form as: Neuroimage. 2016 Oct 1;144(Pt A):183–202. doi: 10.1016/j.neuroimage.2016.09.070

Fig. 3.

Fig. 3

Automatic segmentation flow chart in this study. T2w MRI is first upsampled to generate SR-T2w MRI using the patch-based SR technique (Manjón et al., 2010a). Then, taking T1w MRI and the SR-T2w MRI as input, ASHS segmentation pipeline (Yushkevich et al., 2015b) is applied to generate the segmentation of hippocampal subfields and medial temporal lobe substructures in SR-T2w MRI space. Abbreviations: ASHS =Automatic Segmentation of Hippocampal Subfields package; T1w MRI=T1-weighted MRI; T2w MRI=T2-weighted MRI; SR-T2w MRI=super-resolution enhanced T2w MRI; SR=super-resolution.