Table 1.

The coverage averages, maximums and averages of top 5th percentile of all positions of all samples.^a

	Sample
	Fag1	Fag2	Fag3	Far1	Far2	Far3	Ole1	Ole2	Ole3
Average sequencing coverage	0.373	0.097	0.129	0.406	0.043	0.121	0.389	0.076	0.183
Maximum coverage	128	100	104	136	71	107	136	98	130
Average of top 5th percentile	46.8	45.1	46.4	51.9	24.1	30.2	58.5	37.5	45.8

^aSample names contain abbreviation of the name of the animal and sequence number of the ejaculate. Average sequencing coverage – the total length of mapped reads divided by the size of cow genome. Maximum coverage – the maximum number of mapped reads that overlap one genomic position. The top 5th percentile is calculated by cumulative coverage, i.e. those genomic positions with the highest coverage values that together sum up to 5% of total coverage.