Table 1.
PHAS regions and their annotations in soybean.
| Chr | PHAS Start | PHAS End | Accession | Gene Name | Homologous Gene | Annotation |
|---|---|---|---|---|---|---|
| Chr02 | 45,229,200 | 45,229,892 | C08 | NA | NA | NA |
| Chr03 | 35,270,999 | 35,271,544 | C08 | Glyma.03G136600 | AT2G41750 | DTW domain-containing protein |
| Chr04 | 47,362,862 | 47,363,575 | C08 | NA | NA | NA |
| Chr04 | 49,035,971 | 49,037,012 | C08,W05 | Glyma.04G219600 | AT5G36930 | Disease resistance protein (TIR-NB-LRR class) family |
| Chr05 | 656,827 | 657,414 | C08 | Glyma.05G006900 | AT3G14470 | NB-ARC domain-containing disease resistance protein |
| Chr05 | 38,268,854 | 38,269,817 | C08,W05 | Glyma.05G198500 | AT5G23570 | SGS3, XS zinc finger domain-containing protein |
| Chr06 | 11,932,996 | 11,934,011 | C08,W05 | Glyma.06G146200 | AT5G36930 | Disease resistance protein (TIR-NB-LRR class) family |
| Chr06 | 19,392,730 | 19,393,674 | C08,W05 | Glyma.06G205100 | AT5G17680 | Disease resistance protein (TIR-NB-LRR class), putative |
| Chr06 | 39,170,442 | 39,171,407 | W05 | Glyma.06G239000 | AT5G17680 | Disease resistance protein (TIR-NB-LRR class), putative |
| Chr06 | 43,287,288 | 43,287,977 | C08,W05 | Glyma.06G254300 | AT3G14470 | NB-ARC domain-containing disease resistance protein |
| Chr06 | 47,410,720 | 47,411,412 | C08,W05 | Glyma.06G285500 | AT5G17680 | Disease resistance protein (TIR-NB-LRR class), putative |
| Chr07 | 4,028,350 | 4,029,084 | C08,W05 | Glyma.07G048000 | AT4G35580 | NTL9 NAC transcription factor-like 9 |
| Chr08 | 41,923,481 | 41,923,921 | C08,W05 | Glyma.08G301200 | AT5G36930 | Disease resistance protein (TIR-NB-LRR class) family |
| Chr08 | 41,923,963 | 41,924,634 | C08 | Glyma.08G301200 | AT5G36930 | Disease resistance protein (TIR-NB-LRR class) family |
| Chr09 | 2,041,836 | 2,042,507 | C08,W05 | Glyma.09G025300 | AT3G03300 | ATDCL2,DCL2 dicer-like 2 |
| Chr09 | 2,737,112 | 2,737,899 | C08,W05 | Glyma.09G032400 | NA | NA |
| Chr09 | 47,565,020 | 47,565,481 | W05 | Glyma.09G256600 | AT3G22470 | Pentatricopeptide repeat (PPR) superfamily protein |
| Chr11 | 30,572,116 | 30,573,147 | C08,W05 | Glyma.11G212800 | AT3G14460 | LRR and NB-ARC domains-containing disease resistance protein |
| Chr12 | 31,231,341 | 31,232,533 | C08,W05 | Glyma.12G163000 | AT1G31540 | Disease resistance protein (TIR-NB-LRR class) family |
| Chr12 | 39,530,806 | 39,531,225 | C08 | Glyma.12G236500 | AT4G27220 | NB-ARC domain-containing disease resistance protein |
| Chr13 | 19,268,532 | 19,269,329 | C08 | NA | NA | NA |
| Chr13 | 29,861,566 | 29,862,427 | C08 | Glyma.13G184800 | AT3G14460 | LRR and NB-ARC domains-containing disease resistance protein |
| Chr13 | 29,875,305 | 29,876,627 | C08,W05 | Glyma.13G184900 | AT3G14470 | NB-ARC domain-containing disease resistance protein |
| Chr13 | 30,174,985 | 30,175,782 | C08,W05 | Glyma.13G187900 | AT3G14470 | NB-ARC domain-containing disease resistance protein |
| Chr13 | 30,207,736 | 30,208,554 | C08,W05 | Glyma.13G188300 | AT3G14470 | NB-ARC domain-containing disease resistance protein |
| Chr13 | 30,389,026 | 30,390,362 | C08,W05 | Glyma.13G190300 | AT3G14470 | NB-ARC domain-containing disease resistance protein |
| Chr13 | 30,664,791 | 30,665,882 | C08 | Glyma.13G193300 | AT3G14470 | NB-ARC domain-containing disease resistance protein |
| Chr13 | 30,727,236 | 30,728,889 | C08,W05 | Glyma.13G194100 | AT3G14470 | NB-ARC domain-containing disease resistance protein |
| Chr13 | 30,915,467 | 30,916,705 | C08,W05 | Glyma.13G195600 | AT3G14460 | LRR and NB-ARC domains-containing disease resistance protein |
| Chr14 | 3,878,256 | 3,878,843 | C08 | NA | NA | NA |
| Chr15 | 43,699,964 | 43,700,551 | C08,W05 | Glyma.15G232400 | AT5G41540 | Disease resistance protein (TIR-NB-LRR class) family |
| Chr15 | 43,746,080 | 43,746,499 | C08 | Glyma.15G232800 | AT3G14460 | LRR and NB-ARC domains-containing disease resistance protein |
| Chr15 | 44,546,466 | 44,547,735 | C08,W05 | NA | NA | NA |
| Chr16 | 1,452,507 | 1,453,157 | C08,W05 | Glyma.16G016600 | AT4G35580 | NTL9 NAC transcription factor-like 9 |
| Chr16 | 1,453,270 | 1,453,905 | C08 | Glyma.16G016600 | AT4G35580 | NTL9 NAC transcription factor-like 9 |
| Chr16 | 1,461,742 | 1,462,416 | C08,W05 | Glyma.16G016700 | AT4G35580 | NTL9 NAC transcription factor-like 9 |
| Chr16 | 1,462,506 | 1,463,177 | C08 | Glyma.16G016700 | AT4G35580 | NTL9 NAC transcription factor-like 9 |
| Chr16 | 2,941,895 | 2,942,482 | C08,W05 | Glyma.16G031100 | AT2G46100 | Nuclear transport factor 2 (NTF2) family protein |
| Chr16 | 4,855,988 | 4,856,743 | C08,W05 | Glyma.16G050500 | AT1G12820 | AFB3 auxin signaling F-box 3 protein |
| Chr16 | 5,770,754 | 5,771,618 | C08,W05 | Glyma.16G058900 | NA | NA |
| Chr16 | 10,648,349 | 10,648,999 | C08,W05 | Glyma.16G087100 | AT5G36930 | Disease resistance protein (TIR-NB-LRR class) family |
| Chr16 | 30,784,351 | 30,785,128 | C08,W05 | Glyma.16G147100 | NA | NA |
| Chr16 | 32,109,362 | 32,110,117 | C08,W05 | Glyma.16G161900 | AT1G12775 | Pentatricopeptide repeat (PPR) superfamily protein |
| Chr16 | 32,167,989 | 32,168,613 | C08 | Glyma.16G162800 | AT1G62670 | RPF2 RNA processing factor 2 |
| Chr16 | 32,182,422 | 32,182,883 | C08 | Glyma.16G163100 | AT1G12700 | ATP binding;nucleic acid binding;helicases |
| Chr16 | 32,453,347 | 32,453,892 | W05 | Glyma.16G165400 | AT1G12300 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Chr16 | 33,378,642 | 33,379,535 | W05 | Glyma.16G173200 | NA | NA |
| Chr16 | 35,681,818 | 35,682,321 | W05 | Glyma.16G194800 | AT1G63130 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Chr16 | 35,687,005 | 35,687,634 | C08,W05 | Glyma.16G195000 | AT1G12775 | Pentatricopeptide repeat (PPR) superfamily protein |
| Chr16 | 35,692,915 | 35,693,523 | C08,W05 | Glyma.16G195100 | AT1G12700 | ATP binding;nucleic acid binding;helicases |
| Chr16 | 35,883,305 | 35,883,850 | W05 | Glyma.16G197600 | AT1G62910 | Pentatricopeptide repeat (PPR) superfamily protein |
| Chr16 | 36,088,255 | 36,088,695 | C08,W05 | Glyma.16G199700 | AT1G62930 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Chr16 | 36,970,009 | 36,970,575 | C08 | Glyma.16G210600 | AT5G36930 | Disease resistance protein (TIR-NB-LRR class) family |
| Chr17 | 40,464,414 | 40,465,001 | C08,W05 | Glyma.17G249500 | NA | NA |
| Chr19 | 34,719,617 | 34,720,288 | C08,W05 | Glyma.19G100200 | AT1G12820 | AFB3 auxin signaling F-box 3 protein |
| Chr19 | 40,040,875 | 40,041,548 | C08,W05 | NA | NA | NA |
| Chr20 | 31,854,969 | 31,855,514 | W05 | NA | NA | NA |
NA: Not found.