Table 2.
Changes in the abundances of phasiRNAs in W05 (wild) and C08 (cultivated) soybeans.
| Gene Name | Annotation | Number of phasiRNAs | Fold Change of Expression Level (W05/C08) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Ga | Gr | Ya | Yr | Sp | Sr | St | |||
| Glyma.04G219600 | Disease resistance protein (TIR-NB-LRR class) | 4 | 1.1 | 0.4 | 0.6 | 1.1 | 0.7 | 1.2 | 0.5 |
| Glyma.06G146200 | Disease resistance protein (TIR-NB-LRR class) | 4 | 1.4 | 0.4 | 0.9 | 1.1 | 0.3 | 0.6 | 0.3 |
| Glyma.06G205100 | Disease resistance protein (TIR-NB-LRR class) | 2 | 1.1 | 0.3 | 1.4 | 0.8 | 1.0 | 1.5 | 0.4 |
| Glyma.06G285500 | Disease resistance protein (TIR-NB-LRR class) | 1 | 1.8 | 0.5 | 1.6 | 1.5 | 1.5 | 1.2 | 1.1 |
| Glyma.08G301200 | Disease resistance protein (TIR-NB-LRR class) | 1 | 0.9 | 0.5 | 0.5 | 0.7 | 0.6 | 1.0 | 0.4 |
| Glyma.12G163000 | Disease resistance protein (TIR-NB-LRR class) | 2 | 0.6 | 0.5 | 0.9 | 1.1 | 1.3 | 1.1 | 0.6 |
| Glyma.13G187900 | NB-ARC domain-containing disease resistance protein | 4 | 3.6 | 2.2 | 2.5 | 2.2 | 1.5 | 2.3 | 3.5 |
| Glyma.11G212800 | LRR and NB-ARC domains-containing disease resistance protein | 1 | 0.6 | 0.5 | 0.6 | 1.0 | 0.8 | 1.5 | 0.5 |
| Glyma.07G048000 | NTL9 NAC transcription factor-like 9 | 4 | 2.0 | 1.9 | 1.8 | 2.5 | 1.6 | 3.2 | 1.7 |
| Glyma.16G016600 | NTL9 NAC transcription factor-like 9 | 1 | 1.1 | 0.3 | 0.4 | 1.0 | 0.3 | 1.1 | 0.3 |
| Glyma.09G025300 | ATDCL2, DCL2 | 2 | 1.0 | 0.3 | 0.9 | 1.2 | 0.6 | 1.4 | 1.0 |
| Glyma.16G050500 | AFB3 auxin signaling F-box 3 | 1 | 2.7 | 0.9 | 1.0 | 0.8 | 0.5 | 0.7 | 1.3 |
| Glyma.16G161900 | Pentatricopeptide repeat (PPR) superfamily protein | 1 | 1.0 | 0.5 | 0.8 | 1.0 | 0.6 | 1.2 | 0.7 |
| Glyma.16G058900 | NA | 3 | 1.0 | 0.4 | 0.9 | 1.0 | 0.6 | 1.1 | 0.5 |
| Glyma.16G147100 | NA | 3 | 0.9 | 1.4 | 0.6 | 1.0 | 0.4 | 1.1 | 0.6 |
| Chr15_44546856_44547257 | NA | 4 | 0.6 | 0.2 | 0.6 | 0.8 | 0.4 | 0.9 | 0.6 |
| Glyma.09G032400 | NA | 5 | 1.1 | 0.5 | 0.7 | 0.8 | 0.7 | 1.0 | 0.5 |
Ga: Germinated seedling aerial parts. Gr: Germinated seedling roots. Ya: Young seedling aerial parts. Yr: Young seedling roots. Sp: Seedling primary leaves. Sr: Seedling roots. St: Seedling trifoliates. Red: Fold change ≤0.5 (higher abundance in C08). Green: Fold change ≥2 (higher abundance in W05).