Table. Primers used to sequence complete genomes of SLEV in study of reemergence of the virus in Arizona and California, USA, 2015*.
| Name | Sequence, 5′ → 3′ | Location of primer binding site at 5′ nucleotide on SLEV 2005 isolate CbAr4005† |
|---|---|---|
| 2300F | GGATTACACAGGGACTACTTGG | 2339 |
| 2300R | TCTGTATGCTCTCCCACATTAAG | 2672 |
| 2700F | CCTGAAGAAGCTGGAAGATGAG | 2786 |
| 2700R | CGCTTTCAATAACGCCATCAC | 3175 |
| 5700F | GGTGATTCAGCTAAACAGGAAGA | 5753 |
| 5700R | GTGATTGCCATGGGTCCATTA | 5936 |
| 800F | CAATCCTGGATATGCCCTAGTT | 852 |
| 800R | ACGGTCCACAACATCTCTTT | 1241 |
| 9000F | CCAAAGTTCTGGGAAATGGTTG | 8981 |
| 9000R | CATAGGAATTCTCACGGCTCAT | 9189 |
| F1 | GAGCGGAGAGGAAACAGATTT | 17 |
| F10 | CGGAGCTGTGACTCTTGATTT | 4976 |
| F11 | AGGCCGTATTGGGAGAAATC | 5981 |
| F12 | CACGACGCAGTATGTGAACT | 7099 |
| F13 | GGAGTGGACGTGTTCCATAA | 8069 |
| F15 | GAGTGAACACCATGCCAAATC | 9099 |
| F16 | TGGTAGGAGGAGTGCTGTAA | 10393 |
| F2 | GGAGAAGTCATGGCTGGTAAA | 1584 |
| F3 | CCCTGGAGTGAAGGAGAAATAAC | 3276 |
| F4 | GGGTTCCCAACTACCAAGTTTA | 5431 |
| F7 | GGTTGAGTGGCTAAGGAAGAA | 9635 |
| F8 | CATTCTTGGCGGGTTTGTTC | 3796 |
| F9 | GCAATAGCTGGGCTGATGTA | 4315 |
| R1 | CGCTGGTCGCTAGAAAGATTAG | 2488 |
| R10 | CGGAGCTGTGACTCTTGATTT | 5418 |
| R12 | CAGATAGCCCTGCTTCCTTTAG | 9099 |
| R2 | AGCACACAAGATGGGAAGAG | 3985 |
| R3 | GAAGCTGGTGATCCACTCATAC | 5651 |
| R4 | ACGATTCCGTCTTTCCTGTATG | 7761 |
| R5 | GCCCACTCCTGTTCTGTTTATC | 8417 |
| R6 | CATCCTGCTCCTGGTGAAAT | 9924 |
| R7 | CCTGTCTTTCCAGGTGTCAATA | 3185 |
| R8 | GGGATTGACCGTAACCAATCT | 2023 |
*SLEV, St. Louis encephalitis virus. †GenBank accession no. FJ753286.2.