Table VI.
Candidate EMB genes in Arabidopsis based on sequence similarity to essential genes in other model eukaryotes
Result of Querying Arabidopsis Genome | Query Dataset of Essential Genesa
|
||
---|---|---|---|
Yeast | Worm | Total | |
Matched Arabidopsis genes found | 1,542 | 1,870 | 2,362 |
Not a known indispensable geneb | 1,454 | 1,756 | 2,225 |
Top match is not a known indispensable | 394 | 421 | 636 |
Unique gene without paralogsc | 165 | 139 | 244 |
BLASTP comparisons were performed using <e−30 as a significant match. Datasets: 1,009 Saccharomyces (Giaever et al., 2002) and 1,158 Caenorhabditis (Kamath et al., 2003) nonviable genes. Total refers to a nonoverlapping set from yeast and worm combined, with duplicate matches removed.
Number of Arabidopsis genes that represent a significant match to a yeast or worm essential gene but do not correspond to a known Arabidopsis gene with a mutant phenotype.
Top Arabidopsis match to a yeast or worm essential; lacks a paralog. None of these corresponds to a known EMB gene.