Table II.
Known genes up-regulated at least 2-fold at 1 h of 50 μm (β-d-Glc)3 treatment
| Probe Set No. | AGI Locus | Gene Description | Fold Increase |
|---|---|---|---|
| Cell Rescue, Defense, Cell Death, and Aging | |||
| 267293_at | At2g23810 | Similar to senescence-associated protein 5 | 2.30 |
| 255479_at | At4g02380 | Senescence-associated gene 21 (SAG21) | 2.46 |
| 252921_at | At4g39030 | Enhanced disease susceptibility 5 (EDS5) | 2.00 |
| 255504_at | At4g02200 | Drought-induced protein-related | 2.30 |
| 252988_at | At4g38410 | Similar to dehydrin ERD10 | 2.00 |
| 252102_at | At3g50970 | Dehydrin Xero2 | 2.46 |
| 252906_at | At4g39640 | Putative gamma-glutamyltransferase | 2.64 |
| 263948_at | At2g35980 | YLS 9, hin1 homolog | 6.06 |
| 250676_at | At5g06320 | NDR1/HIN1-like protein 3 (NHL3) | 2.64 |
| 259071_at | At3g11650 | NDR1/HIN1-like protein 2 (NHL2) | 2.46 |
| 254014_at | At4g26120 | NPR1 like protein | 2.30 |
| 265008_at | At1g61560 | MLO6 | 2.30 |
| 267357_at | At2g40000 | Nematode-resistance protein-related | 4.59 |
| 251774_at | At3g55840 | Nematode-resistance protein-related | 3.25 |
| 247848_at | At5g58120 | Similar to disease resistance protein RPP1-WsA | 2.00 |
| 252648_at | At3g44630 | Disease resistance protein RPP1-WsB-like | 2.00 |
| 258577_at | At3g04220 | Similar to disease resistance protein RPP1-WsC | 2.64 |
| 254905_at | At4g11170 | TIR-NBS-LRR class putative disease resistance protein | 3.48 |
| 245654_at | At1g56540 | TIR-NBS-LRR class disease resistance protein | 2.64 |
| 249264_s_at | At5g41740 | TIR-NBS-LRR class disease resistance protein | 2.30 |
| 249029_at | At5g44870 | TIR-NBS-LRR class disease resistance protein | 2.14 |
| 249903_at | At5g22690 | TIR-NBS-LRR class disease resistance protein | 2.00 |
| 252126_at | At3g50950 | CC-NBS-LRR class disease resistance protein | 2.30 |
| 265597_at | At2g20145 | TIR-class disease resistance protein | 4.59 |
| 265136_at | At1g51280 | TIR-class disease resistance protein | 2.46 |
| 249032_at | At5g44910 | TIR-class disease resistance protein | 2.00 |
| 265723_at | At2g32140 | TIR class disease resistance protein | 4.29 |
| 262381_at | At1g72900 | TIR-NBS class similar to virus resistance protein | 3.25 |
| 262382_at | At1g72920 | TIR-NBS class similar to virus resistance protein | 2.46 |
| 256526_at | At1g66090 | TIR-NBS class disease resistance protein | 5.66 |
| 245033_at | At2g26380 | LRR disease resistance protein-related | 2.46 |
| 259805_at | At1g47890 | LRR disease resistance protein | 2.46 |
| 267411_at | At2g34930 | LRR disease resistance protein | 3.48 |
| 246916_at | At5g25910 | LRR disease resistance protein | 2.64 |
| 260406_at | At1g69920 | Similar to glutathione transferase | 3.73 |
| 248719_at | At5g47910 | Respiratory burst oxidase protein D (RBOHD) | 2.64 |
| 253496_at | At4g31870 | Glutathione peroxidase | 2.00 |
| 261474_at | At1g14540 | Putative anionic peroxidase | 18.38 |
| 261475_at | At1g14550 | Putative anionic peroxidase | 2.00 |
| 250702_at | At5g06730 | Peroxidase | 2.30 |
| 250646_at | At5g06720 | Peroxidase | 2.14 |
| 249459_at | At5g39580 | Peroxidase ATP24a | 4.59 |
| Cell Wall | |||
| 258764_at | At3g10720 | Putative pectinesterase | 5.28 |
| 245151_at | At2g47550 | Putative pectinesterase | 3.48 |
| 252989_at | At4g38420 | Putative pectinesterase | 3.03 |
| 255524_at | At4g02330 | Similar to pectinesterase | 3.73 |
| 259033_at | At3g09410 | Putative pectinacetylesterase | 3.03 |
| 255175_at | At4g07960 | Similar to cellulose synthase (AtCSLC12) | 2.00 |
| 257950_at | At3g21780 | Putative UDP-Glc glucosyltransferase | 2.14 |
| 252179_at | At3g50760 | Glycosyltransferase | 2.14 |
| 265499_at | At2g15480 | Glucosyltransferase-related | 2.14 |
| 265501_at | At2g15490 | Glucosyltransferase-related | 2.00 |
| 265199_s_at | At2g36770 | Glycosyltransferase | 4.59 |
| 251971_at | At3g53160 | UDP-glycosyltransferase | 2.00 |
| 264857_at | At1g24170 | Glycosyltransferase | 2.14 |
| 257203_at | At3g23730 | At-XTH16 | 2.64 |
| 264157_at | At1g65310 | At-XTH17 (XTR1) | 5.66 |
| 253628_at | At4g30280 | At-XTH18 | 2.64 |
| 247925_at | At5g57560 | At-XTH22 (TCH4) | 2.14 |
| 254042_at | At4g25810 | At-XTH23 (XTR6) | 3.03 |
| 253666_at | At4g30270 | At-XTH-24 (meri5B) | 2.83 |
| 245794_at | At1g32170 | At-XTH30 (XTR4) | 3.25 |
| 258388_at | At3g15370 | AtEXP12 | 2.30 |
| 252997_at | At4g38400 | EXPL2 | 2.30 |
| 252557_at | At3g45960 | EXPL3 | 2.14 |
| 253050_at | At4g37450 | AGP18 | 2.30 |
| 259664_at | At1g55330 | AGP21 | 2.00 |
| 248252_at | At5g53250 | AGP22 | 2.83 |
| 254770_at | At4g13340 | Leu-rich repeat extensin | 3.03 |
| 265114_at | At1g62440 | Leu-rich repeat/extensin2 (LRX2) | 2.14 |
| 260556_at | At2g43620 | Putative endochitinase | 2.30 |
| 259443_at | At1g02360 | Putative chitinase | 2.14 |
| 265648_at | At2g27500 | Putative beta-1,3-glucanase | 2.00 |
| 264280_at | At1g61820 | Putative beta-glucosidase | 3.03 |
| 251456_at | At3g60120 | Beta-glucosidase-like | 2.00 |
| 255756_at | At1g19940 | Putative endo-beta-1,4-d-glucanase | 3.03 |
| 258631_at | At3g07970 | Putative polygalacturonase | 3.03 |
| Cytoskeleton | |||
| 252873_at | At4g40020 | Putative protein myosin heavy chain | 2.14 |
| 256275_at | At3g12110 | Actin 11 (ACT11) | 2.14 |
| Plant Development | |||
| 250024_at | At5g18270 | NAM-like protein | 2.00 |
| Cellular Communication/Signal Transduction | |||
| 253103_at | At4g36110 | Putative auxin-induced protein | 2.64 |
| 250279_at | At5g13200 | ABA-responsive protein-like | 2.00 |
| 252592_at | At3g45640 | AtMPK3 | 4.59 |
| 254924_at | At4g11330 | AtMPK5 | 2.00 |
| 259428_at | At1g01560 | AtMPK11 | 2.00 |
| 253937_at | At4g26890 | MAPKKK16 | 2.30 |
| 248090_at | At5g55090 | MAPKKK15 | 2.46 |
| 247137_at | At5g66210 | Calcium dependent protein kinase 28 (CPK28) | 2.00 |
| 251636_at | At3g57530 | Calcium dependent protein kinase 32 (CPK32) | 2.00 |
| 262228_at | At1g68690 | Similar to protein kinase 1 | 2.30 |
| 254605_at | At4g18950 | Protein kinase 6 | 2.83 |
| 251494_at | At3g59350 | Similar to Pto kinase interactor 1 | 2.00 |
| 257840_at | At3g25250 | Putative protein kinase | 5.28 |
| 266037_at | At2g05940 | Putative protein kinase | 2.83 |
| 266196_at | At2g39110 | Putative protein kinase | 2.83 |
| 267289_at | At2g23770 | Putative protein kinase | 2.83 |
| 249705_at | At5g35580 | Putative protein kinase | 2.64 |
| 264232_at | At1g67470 | Putative protein kinase | 2.30 |
| 246608_at | At5g35380 | Putative protein kinase | 2.83 |
| 253747_at | At4g29050 | lecRK1-like | 8.57 |
| 251054_at | At5g01540 | Similar to receptor lectin kinase 3 | 2.00 |
| 264718_at | At1g70130 | Similar to receptor lectin kinase 3 | 4.59 |
| 261394_at | At1g79680 | WAKL10 | 2.14 |
| 257478_at | At1g16130 | WAKL2 | 2.00 |
| 254241_at | At4g23190 | RLK3 | 2.14 |
| 254898_at | At4g11480 | Similar to RLK3 | 5.28 |
| 254256_at | At4g23180 | RLK4 | 2.14 |
| 246858_at | At5g25930 | RLK5 like | 2.46 |
| 260975_at | At1g53430 | Putative receptor Ser/Thr protein kinase | 2.00 |
| 247145_at | At5g65600 | Receptor-like protein kinase | 3.48 |
| 259213_at | At3g09010 | Putative receptor Ser/Thr protein kinase | 2.14 |
| 247617_at | At5g60270 | Receptor-like protein kinase | 2.00 |
| 253323_at | At4g33920 | Putative protein phosphatase | 2.00 |
| 259859_at | At1g68410 | Similar to protein phosphatase-2C | 2.00 |
| 249197_at | At5g42380 | Calmodulin-related protein | 16.00 |
| 246821_at | At5g26920 | Calmodulin-binding protein | 3.73 |
| 252417_at | At3g47480 | Calcium-binding EF-hand protein | 2.14 |
| 256755_at | At3g25600 | Similar to calmodulin | 2.00 |
| 260068_at | At1g73805 | Putative calmodulin-binding protein | 3.48 |
| 249417_at | At5g39670 | Calcium-binding EF-hand protein | 2.83 |
| 254487_at | At4g20780 | Calcium-binding protein | 2.64 |
| 267083_at | At2g41100 | Calmodulin-like 5 (AtCAL5) (TCH3) | 2.83 |
| 260881_at | At1g21550 | Calcium-binding protein | 2.30 |
| 260135_at | At1g66400 | Calmodulin-related protein | 3.03 |
| 260046_at | At1g73800 | Calmodulin-binding protein | 2.46 |
| 255599_at | At4g01010 | Cyclic nucleotide gated channel (CNGC13) | 2.30 |
| 252825_at | At4g39890 | Ras family GTP-binding protein | 2.00 |
| 253257_at | At4g34390 | Extra-large G-protein-like | 2.00 |
| Cell Growth, Cell Division, and DNA Synthesis | |||
| 267393_at | At2g44500 | axi 1 (auxin independent growth)-related | 3.73 |
| 253271_s_at | At4g34210 | SKP1-like 11 | 2.14 |
| Metabolism | |||
| 252070_at | At3g51680 | Short-chain alcohol dehydrogenase | 3.73 |
| 267169_at | At2g37540 | Short-chain dehydrogenase/reductase family protein | 3.03 |
| 256319_at | At1g35910 | Similar to trehalose-6-phosphate phosphatase | 3.48 |
| 250467_at | At5g10100 | Similar to trehalose-6-phosphate phosphatase | 3.03 |
| 265841_at | At2g35710 | Glycogenin glucosyltransferase (glycogenin)-related | 2.46 |
| 265221_s_at | At2g02010 | Glutamate decarboxylase | 4.00 |
| 252652_at | At3g44720 | Putative prephenate dehydratase | 2.30 |
| 249910_at | At5g22630 | Chorismate mutase/prephenate dehydratase-like protein | 3.48 |
| 265725_at | At2g32030 | Putative Ala acetyl transferase | 18.38 |
| 254158_at | At4g24380 | Putative dihydrofolate reductase | 2.64 |
| 261933_at | At1g22410 | Putative 2-dehydro-3-deoxyphosphoheptonate aldolase | 2.14 |
| 254707_at | At4g18010 | Inositol polyphosphate 5-phosphatase II (IP5PII) | 2.46 |
| 252976_s_at | At4g38550 | Phospholipase-like protein | 2.14 |
| 254847_at | At4g11850 | Phospholipase d-gamma (PLDGAMMA1) | 2.14 |
| 245447_at | At4g16820 | Triacylglycerol lipase-like protein | 2.00 |
| 267318_at | At2g34770 | Fatty acid hydroxylase (FAH1) | 2.14 |
| 263198_at | At1g53990 | GDSL-motif lipase/hydrolase protein | 2.14 |
| 249333_at | At5g40990 | GDSL-motif lipase/hydrolase-like protein | 2.46 |
| 260399_at | At1g72520 | Putative lipoxygenase | 6.50 |
| 261037_at | At1g17420 | Putative lipoxygenase | 3.48 |
| 262745_at | At1g28600 | Putative lipase | 2.00 |
| 265737_at | At2g01180 | Phosphatidic acid phosphatase (AtPAP1) | 3.03 |
| 252870_at | At4g39940 | Adenosine-5-phosphosulfate-kinase (AKN2) | 2.00 |
| 251028_at | At5g02230 | Haloacid dehalogenase-like | 2.64 |
| Secondary Metabolism | |||
| 256922_at | At3g19010 | Contains similarity to flavonol synthase | 2.00 |
| 254926_at | At4g11280 | ACC synthase (AtACS-6) | 2.14 |
| 263845_at | At2g37040 | Phenylalanine ammonia lyase (PAL1) | 3.48 |
| 251984_at | At3g53260 | Phenylalanine ammonia-lyase (PAL2) | 5.66 |
| 249188_at | At5g42830 | N-hydroxycinnamoyl benzoyltransferase-like protein | 5.28 |
| 251124_s_at | At5g01040 | Laccase-like protein | 3.25 |
| 261449_at | At1g21120 | Putative O-methyltransferase 1 | 2.64 |
| 261453_at | At1g21130 | Putative O-methyltransferase 1 | 3.73 |
| 261459_at | At1g21100 | Putative O-methyltransferase 1 | 2.46 |
| 261450_s_at | At1g21110 | Putative O-methyltransferase 1 | 2.14 |
| 261899_at | At1g80820 | Cinnamoyl CoA reductase isoform 2 (CCR2) | 2.14 |
| 262744_at | At1g28680 | Similar to N-hydroxycinnamoyl/benzoyltransferase | 2.14 |
| 254447_at | At4g20860 | Similar to reticulin oxidase | 2.30 |
| 261021_at | At1g26380 | Similar to reticulin oxidase | 9.19 |
| 261005_at | At1g26420 | Similar to reticulin oxidase | 4.59 |
| Cytochrome P450 | |||
| 254562_at | At4g19230 | CYP707A1 | 2.30 |
| 247949_at | At5g57220 | CYP81F2 | 5.66 |
| 248964_at | At5g45340 | CYP707A3 | 3.73 |
| 248358_at | At5g52400 | CYP715A1 | 3.25 |
| 253503_at | At4g31950 | CYP82C3 | 2.30 |
| 252827_at | At4g39950 | CYP79B2 | 2.14 |
| Protein Destination | |||
| 266168_at | At2g38870 | Protease inhibitor-related | 5.66 |
| 250944_at | At5g03380 | Farnesylated protein-like | 2.30 |
| 264866_at | At1g24140 | Metallo proteinase-related | 4.59 |
| 245738_at | At1g44130 | Putative nucellin | 2.64 |
| 264716_at | At1g70170 | Matrix metalloproteinase (MMP) | 2.46 |
| 249626_at | At5g37540 | Putative protein nucleoid DNA-binding protein cnd41 | 2.14 |
| 263614_at | At2g25240 | Ser protease inhibitor (putative serpin) | 2.00 |
| 245034_at | At2g26390 | Ser protease inhibitor (putative serpin) | 2.00 |
| Transcription | |||
| 261984_at | At1g33760 | TINY-like protein | 9.19 |
| 260856_at | At1g21910 | TINY-like protein | 2.46 |
| 264202_at | At1g22810 | TINY-like protein | 2.46 |
| 261327_at | At1g44830 | TINY-like protein | 2.30 |
| 254075_at | At4g25470 | DREB1C/CBF2 | 2.30 |
| 252214_at | At3g50260 | EREBP-3 homolog, Stylosanthes hamata | 4.92 |
| 247543_at | At5g61600 | Putative EREBP-4 | 2.64 |
| 248799_at | At5g47230 | AtERF5 | 2.00 |
| 245250_at | At4g17490 | AtERF6 | 4.92 |
| 261470_at | At1g28370 | Similar to AtERF11 | 2.30 |
| 267451_at | At2g33710 | Similar to RAP2.6 | 2.14 |
| 260037_at | At1g68840 | RAV2 | 2.64 |
| 248896_at | At5g46350 | WRKY8 | 2.14 |
| 267028_at | At2g38470 | WRKY33 | 2.64 |
| 261892_at | At1g80840 | WRKY40 | 3.25 |
| 263783_at | At2g46400 | WRKY46 | 2.46 |
| 254231_at | At4g23810 | WRKY53 | 2.30 |
| 250153_at | At5g15130 | WRKY72 | 2.14 |
| 245976_at | At5g13080 | WRKY75 | 2.64 |
| 251745_at | At3g55980 | Zinc finger transcription factor (PEI1) | 4.92 |
| 261648_at | At1g27730 | ZAT10/STZ | 3.25 |
| 266010_at | At2g37430 | ZAT11 | 128.00 |
| 247655_at | At5g59820 | ZAT12 | 4.92 |
| 257022_at | At3g19580 | AZF2 | 2.14 |
| 251861_at | At3g54810 | GATA transcription factor 3 | 2.46 |
| 256576_at | At3g28210 | Zinc finger protein (PMZ) | 2.14 |
| 254919_at | At4g11360 | RING-H2 finger protein (RHA1B) | 3.25 |
| 254922_at | At4g11370 | RING-H2 finger protein (RHA1A) | 2.46 |
| 246777_at | At5g27420 | RING-H2 zinc finger protein (ATL6) | 2.46 |
| 257919_at | At3g23250 | MYB15 | 3.03 |
| 255753_at | At1g18570 | MYB51 | 3.03 |
| 246253_at | At4g37260 | MYB73 | 2.14 |
| 252193_at | At3g50060 | MYB77 | 3.03 |
| 264119_at | At1g79180 | Myb transcription factor | 2.64 |
| 247535_at | At5g61620 | Transcriptional activator-like | 2.14 |
| 263735_s_at | At1g60040 | MADS box protein | 3.25 |
| 256050_at | At1g07000 | Putative Leu zipper protein | 2.14 |
| 261860_at | At1g50600 | Scarecrow-like transcription factor 5 (SCL5) | 2.30 |
| Transport Facilitation | |||
| 256833_at | At3g22910 | Calcium-transporting ATPase | 4.29 |
| 251176_at | At3g63380 | Calcium-transporting ATPase | 2.64 |
| 257183_at | At3g13220 | ABC transporter | 4.29 |
| 254663_at | At4g18290 | Potassium channel protein KAT2 | 2.46 |
| 253181_at | At4g35180 | Similar to amino acid permease 1 | 3.25 |
| 245740_at | At1g44100 | Amino acid permease 5 (AAP5) | 2.00 |
| 250415_at | At5g11210 | Ligand-gated channel subunit (GLR2.5) | 3.03 |
| 254120_at | At4g24570 | Mitochondrial uncoupling protein | 2.00 |
| 245892_at | At5g09370 | Putative lipid transfer protein | 2.64 |
| 248392_at | At5g52050 | MATE efflux protein-related | 2.46 |
| Cellular Transport and Transport Mechanisms | |||
| 247493_at | At5g61900 | Copine-like protein | 4.29 |
| 251336_at | At3g61190 | BON1-associated protein 1 (BAP1) | 5.66 |
| 258786_at | At3g11820 | Syntaxin (SYP121) | 2.00 |
| 252053_at | At3g52400 | Syntaxin (SYP122) | 2.64 |
| 246453_at | At5g16830 | Syntaxin (SYP21) | 2.46 |
| Other Functions | |||
| 257206_at | At3g16530 | Lectin-related | 5.28 |
| 248686_at | At5g48540 | 33-kD secretory protein-related | 3.48 |
| 250323_at | At5g12880 | Putative Hyp-rich glycoprotein | 2.83 |
| 254204_at | At4g24160 | Putative protein CGI-58 protein-Homo sapiens | 3.03 |
| 266884_at | At2g44790 | Phytocyanin | 3.25 |
| 266769_s_at | At2g03080 | Putative reverse transcriptase | 2.14 |
| 265618_at | At2g25460 | SYNC 1 protein | 2.30 |
| 247208_at | At5g64870 | Nodulin-like | 4.00 |
| 246927_s_at | At5g25260 | Nodulin-like | 2.46 |
| 252679_at | At3g44260 | CCR4-associated factor 1-like protein | 3.25 |
| 249928_at | At5g22250 | CCR4-associated factor-like protein | 2.83 |
| 255064_at | At4g08950 | Phi-1 phosphate-induced protein-related | 3.48 |
| 247280_at | At5g64260 | Putative phi-1 protein | 2.46 |
| 245757_at | At1g35140 | Phosphate-induced 1 (PHI-1) | 2.83 |
| 251884_at | At3g54150 | Embryonic abundant protein-like | 3.03 |
| 264758_at | At1g61340 | Similar to late embryogenesis abundant protein | 2.14 |
| 265075_at | At1g55450 | Similar to embryo-abundant protein | 3.03 |
| 254318_at | At4g22530 | Embryo-abundant protein | 2.14 |
| 252131_at | At3g50930 | AAA-type ATPase | 2.64 |
| 245765_at | At1g33600 | Leu-rich repeat protein | 3.03 |
| 252045_at | At3g52450 | Similar to immediate-early fungal elicitor protein CMPG1 | 2.46 |
| 260706_at | At1g32350 | Putative oxidase | 2.30 |
| 259875_s_at | At1g76690 | 12-oxophytodienoate reductase (OPR2) | 2.46 |
| 265938_at | At2g19620 | Putative SF21 protein | 2.64 |
| 254784_at | At4g12720 | Growth factor-like protein | 2.64 |
See Table I caption for other details.