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. 2004 Jul;135(3):1849–1862. doi: 10.1104/pp.103.031534

Figure 2.

Figure 2.

Single most parsimonious tree obtained by phylogenetic analysis of cytosolic GS sequences (consistency index [excluding autapomorphies] = .2604; retention index = .5717; rescaled consistency index = .1591). Plastidic GS sequences were designated as the outgroup. Numbers above the branches are branch lengths (ACCTRAN optimization); numbers below the branches preceded by “d” are decay values. Brackets with Greek letters refer to legume GS subclasses alpha, beta, and gamma. For graphical simplification, triangles are used to represent species pairs. Sources of Gln synthetase DNA sequences for phylogenetic analysis: organism, type (cp, plastidic localization; cyt, cytosolic localization), organ from which the cDNA was isolated for cytosolic GS sequences, GenBank accession number, reference. A. glutinosa, cyt (nodule), Y08681, Guan et al., 1996; Arabidopsis cp, S69727, Peterman and Goodman, 1991; Arabidopsis 1 cyt (genomic sequence derived mRNA) NM 105291; Arabidopsis 2 cyt (genomic sequence derived mRNA) BT000753; Arabidopsis 3 cyt (genomic sequence derived mRNA) BT006245; Arabidopsis 4 cyt (genomic sequence derived mRNA) AY128749; Brassica napus-1, cyt (root), X76736, Schock et al., 1994; B. napus-2, cyt (root), Y12459, Ochs et al., 1999; B. napus-3, cyt (root), X82997, Ochs et al., 1999; B. napus cp-1, cp, Y12458, Ochs et al., 1999; B. napus cp-2, cp, X72751, Ochs et al., 1999; Glycine max, cyt (nodule), S46513, Miao et al., 1991; G. max-1, cyt (nodule), X81460, Marsolier et al., 1995; G. max-2, cyt (nodule), X81700, Marsolier et al., 1995; Hevea brasilensis, cyt (latex cells), AF003197, Pujade-Renaud et al., 1997; Hordeum vulgare, cp, X16000, Freeman et al., 1990; Lactuca sativa, cyt (seed), X60092, Sakamoto et al., 1990; Lotus japonicus, cyt (root), X94299, Ruiz et al., 1999; Lupinus luteus, cyt (nodule), X71399, Boron and Legocki, 1993; Medicago truncatula-1, cyt (nodule), Y10267, Carvalho et al., 1997; M. truncatula-2, cyt (nodule), Y10268, Carvalho et al., 1997; M. sativa, cyt (nodule), U15591, Temple et al., 1995; Nicotiana plumbaginifolia, cp, M19055, Tingey and Coruzzi, 1987; Nicotiana sylvestris, cp, X66940, Becker et al., 1992; Nicotiana tabacum-1, cyt (seedling), X95932, Dubois et al., 1996; N. tabacum-2, cyt (seedling), X95933, Dubois et al., 1996; Oryza sativa, cyt (shoot), X14245, Sakamoto et al., 1989; O. sativa, cyt (derived from genomic sequence), AB037595, Kojima et al., 2000; O. sativa, cp, X14246, Sakamoto et al., 1989; Pinus sylvestris, cyt (seedling), X74429, Elmlinger et al., 1994; Pisum sativum-1, cyt (nodule), X05515, Tingey et al., 1987; P. sativum-2, cyt (nodule), X04763, Tingey et al., 1987; P. sativum 3 cyt (nodule) M20663, Tingey et al., 1988; P. sativum cp, M20664, Tingey et al., 1988; Phaseolus vulgaris-1, cyt (root), X04001, Gebhardt et al., 1986; P. vulgaris-2, cyt (root), X04002, Gebhardt et al., 1986; P. vulgaris, cp, X12738, Lightfoot et al., 1988; P. vulgaris gamma, cyt (nodule) X14605, Bennett et al., 1989; Populus alba × Populus tremula cyt AF236074, Wu, D. and Kirby, E.G. direct submission, 2000; Raphanus sativus-1, cyt (senescing cotyledon), D25325, Watanabe et al., 1994; R. sativus-2, cyt (senescing cotyledon), D25326, Watanabe et al., 1994; Vigna aconitifolia, cyt (nodule), M94765, Lin et al., 1995; Vitis vinifera-1, cyt (shoot), X94321, Loylakakis and Roubelakis, 1996; V. vinifera-2, cyt (shoot), X94320, Loylakakis and Roubelakis, 1996; Zea mays-1, cyt (leaves), D14578(GS1C), Sakakibara et al., 1992; Z. mays-2, cyt (leaves), D14579(GS1D), Sakakibara et al., 1992; Z. mays-3, cyt (leaves), D14577(GS1B), Sakakibara et al., 1992; Z. mays-4, cyt (leaves), D14576(GS1A), Sakakibara et al., 1992.