Table 1. Frameshift sites in RECODE with downstream stem–loops and X XXY YYG slippery sequences.
| RECODE ID | Organisms | ||
|---|---|---|---|
| Frameshift signals with X XXY YYZ (Z ≠ G) and a downstream stem | Frameshift signals with X XXY YYG and a downstream stem | Frameshift signals with X XXY YYG and other downstream structures | |
| 71 | Escherichia coli | ||
| 82 | HIV type 1 | ||
| 83 | HIV type 2 | ||
| 84 | Human T-cell lympotrophic virus type 1 | ||
| 85 | Human T-cell lympotrophic virus type 2 | ||
| 92 | Red clover necrotic mosaic virusa | ||
| 97 | Simian T-cell lymphosropic virus type 1 | ||
| 104 | Bacteriophage lambda | ||
| 106 | Drosophila buzzatii Ossvaldo retrotransposon | ||
| 237 | IS2 | ||
| 238 | IS911 | ||
| 251 | IS150 | ||
| 252 | IS1221A | ||
| 257 | Carrot mottle mimic virusa | ||
| 258 | Groundnut rosette virus | ||
| 260 | Pea enation mosaic virus RNA 2a | ||
| 360 | Salmonella typhi | ||
| 361 | Salmonella typhimurium | ||
| 362 | Vibrio cholerae | ||
| 363 | Neisseria meningtidis | ||
| 364 | Neisseria gonorrhoeae | ||
| 365 | Neisseria meningitides | ||
| 392 | Yersinia pestis |
aIndicates a frameshift site that was not identified by FSFinder because the slippery sequence did not conform to the motif X XXY YYZ.