Table 2.
The difference of virulence-associated genes in some or all comparison genomes using BLAST.
| Database | PmCQ2 | PmCQ6 | Pm36950 | PmHN06 | Pm3480 | Pm70 | Annotation |
|---|---|---|---|---|---|---|---|
| Phages-associated genes | PmCQ2_1g0197 | Pmu_00900 | PMCN06_0843 | IS200 transposase | |||
| PmCQ2_1g0267 | Pmu_13570 | IS200 transposase | |||||
| PmCQ2_1g0316 | Pmu_13960 | IS200 transposase | |||||
| PmCQ2_1g0378 | Pmu_16290 | IS200 transposase | |||||
| PmCQ2_2g0113 | Pmu_17660 | IS200 transposase | |||||
| PmCQ2_4g0323 | Pmu_18340 | IS200 transposase | |||||
| PmCQ2_4g0359 | IS200 transposase | ||||||
| PmCQ2_2g0080 | Pmu_00570 | PMCN06_0130 | NT08PM_0122 | PM1098 | Glycyl-tRNA synthetase subunit alpha | ||
| PmCQ2_2g0148 | Pmu_01310 | PMCN06_0200 | NT08PM_0197 | PM1029 | Peptidase B | ||
| PmCQ2_2g0349 | Pmu_04490 | PMCN06_0404 | NT08PM_0930 | PM0385 | Electron transport complex protein RnfC | ||
| PmCQ2_2g0231 | Pmu_15590 | NT08PM_1618 | PM1778 | Hypothetical protein | |||
| PmCQ2_6g0020 | Hypothetical protein | ||||||
| PmCQ2_2g0066 | Transposase IS605 | ||||||
| PmCQ2_2g0097 | Transposase IS605 | ||||||
| PmCQ2_6g0026 | Transposase IS605 | ||||||
| PmCQ2_2g0228 | NT08PM_0285 | Hypothetical protein | |||||
| PmCQ2_2g0229 | NT08PM_0286 | Hypothetical protein | |||||
| PmCQ2_2g0230 | NT08PM_0288 | Hypothetical protein | |||||
| PmCQ2_2g0233 | NT08PM_0294 | Phage major capsid protein | |||||
| PmCQ2_2g0234 | NT08PM_0295 | Hypothetical protein | |||||
| PmCQ2_2g0235 | NT08PM_0298 | Prophage integrase, putative | |||||
| PmCQ2_2g0067 | Transposase IS200 | ||||||
| PmCQ2_2g0096 | Transposase IS200 | ||||||
| PmCQ2_2g0232 | Hypothetical protein | ||||||
| PmCQ2_2g0088 | ModB, partial | ||||||
| PmCQ6_9g0009 | PMCN06_2102 | Hypothetical protein PMCN06_2102 | |||||
| PmCQ6_9g0008 | PMCN06_2103 | Hypothetical protein PMCN06_2103 | |||||
| PmCQ6_9g0006 | PMCN06_2105 | Hypothetical protein PMCN06_2105 | |||||
| PmCQ6_9g0003 | Tail assembly protein I | ||||||
| PmCQ6_9g0001 | Host specificity protein, putative, partial | ||||||
| PmCQ6_9g0005 | Tail protein | ||||||
| PmCQ6_9g0004 | Tail assembly protein | ||||||
| Genomic islands | PmCQ2_1g0197 | Pmu_00900 | PMCN06_0843 | IS200 transposase | |||
| PmCQ2_1g0267 | Pmu_13570 | IS200 transposase | |||||
| PmCQ2_1g0316 | Pmu_13960 | IS200 transposase | |||||
| PmCQ2_1g0378 | Pmu_16290 | IS200 transposase | |||||
| PmCQ2_2g0113 | Pmu_17660 | IS200 transposase | |||||
| PmCQ2_4g0323 | Pmu_18340 | IS200 transposase | |||||
| PmCQ2_4g0359 | IS200 transposase | ||||||
| PmCQ2_2g0231 | Pmu_15590 | NT08PM_1618 | PM1778 | Hypothetical protein | |||
| PmCQ2_6g0025 | PMCN06_0111 | NT08PM_0103 | Hypothetical protein PMCN06_0111 | ||||
| PMCN06_1438 | |||||||
| PMCN06_2110 | |||||||
| PmCQ2_5g0021 | PMCN06_0084 | NT08PM_0084 | Hypothetical protein PMCN06_0084 | ||||
| PMCN06_2086 | |||||||
| PmCQ2_5g0019 | PMCN06_0086 | NT08PM_0086 | Phage terminase, large subunit, pbsx family, putative | ||||
| PMCN06_2088 | |||||||
| PmCQ2_2g0228 | NT08PM_0285 | Hypothetical protein | |||||
| PmCQ2_2g0229 | NT08PM_0286 | Hypothetical protein | |||||
| PmCQ2_2g0230 | NT08PM_0288 | Hypothetical protein | |||||
| PmCQ2_2g0233 | NT08PM_0294 | Phage major capsid protein | |||||
| PmCQ2_2g0234 | NT08PM_0295 | Hypothetical protein | |||||
| PmCQ2_2g0235 | NT08PM_0298 | Prophage integrase, putative | |||||
| PmCQ2_7g0006 | PMCN06_0066 | Transcriptional regulator | |||||
| PmCQ2_5g0013 | PMCN06_0092 | Hypothetical protein PMCN06_0092 | |||||
| PmCQ2_5g0025 | PMCN06_2080 | Hypothetical protein | |||||
| PmCQ6_17g0009 | PMCN06_0073 | NT08PM_0074 | Site-specific DNA-methyltransferase (adenine-specific) | ||||
| PMCN06_2074 | |||||||
| PmCQ6_17g0011 | PMCN06_0074 | NT08PM_0075 | Putative bacteriophage protein | ||||
| PMCN06_2076 | |||||||
| PmCQ6_5g0001 | PMCN06_0082 | NT08PM_0082 | Lysozyme | ||||
| PMCN06_2084 | |||||||
| PmCQ6_17g0004 | PMCN06_1403 | Hypothetical protein | |||||
| PMCN06_2067 | |||||||
| PmCQ6_C4143g0001 | PMCN06_1416 | Glycoside hydrolase | |||||
| PmCQ6_17g0007 | PMCN06_2072 | Hypothetical protein PMCN06_2072 | |||||
| PmCQ6_17g0008 | PMCN06_2073 | Putative replicative DNA helicase | |||||
| PmCQ6_17g0010 | PMCN06_2075 | Hypothetical protein PMCN06_2075 | |||||
| PmCQ6_9g0009 | PMCN06_2102 | Hypothetical protein PMCN06_2102 | |||||
| PmCQ6_9g0008 | PMCN06_2103 | Hypothetical protein PMCN06_2103 | |||||
| PmCQ6_9g0006 | PMCN06_2105 | Hypothetical protein PMCN06_2105 | |||||
|
| |||||||
| ISs | PmCQ2_1g0197 | Pmu_00900 | PMCN06_0843 | IS200 transposase | |||
| PmCQ2_1g0267 | Pmu_13570 | PMCN06_0843 | IS200 transposase | ||||
| PmCQ2_1g0316 | Pmu_13960 | PMCN06_0843 | IS200 transposase | ||||
| PmCQ2_1g0378 | Pmu_16290 | PMCN06_0843 | IS200 transposase | ||||
| PmCQ2_2g0113 | Pmu_17660 | PMCN06_0843 | IS200 transposase | ||||
| PmCQ2_4g0323 | Pmu_18340 | PMCN06_0843 | IS200 transposase | ||||
| PmCQ2_4g0359 | PMCN06_0843 | IS200 transposase | |||||
| PmCQ6_12g0001 | Putative transposase for insertion sequence IS1162 | ||||||
|
| |||||||
| VFDB | PmCQ2_4g0316 | Pmu_13500 | PMCN06_1329 | NT08PM_1414 | PM1994 | UDP-3-O-[3-hydroxymyristoyl]; UDP-3-O-acylglucosamine N-acyltransferase | |
| PmCQ2_1g0631 | Pmu_21120 | PMCN06_2192 | NT08PM_2001 | PM1666 | Noncanonical purine NTP pyrophosphatase, RdgB/HAM1 family | ||
| PmCQ2_4g0241 | Pmu_12710 | PMCN06_1257 | NT08PM_1342 | PM0051 | Iron-binding protein FbpA | ||
| PmCQ2_3g0252 | Pmu_08050 | PMCN06_0796 | NT08PM_0537 | PM0734 | Periplasmic serine protease do/hhoA-like protein | ||
| PmCQ2_2g0162 | Pmu_01460 | PMCN06_0215 | NT08PM_0212 | PM1015 | Hypothetical protein PM1015 | ||
| PmCQ2_1g0106 | Pmu_15140 | PMCN06_1551 | NT08PM_1574 | PM1820 | Putative virulence effector, SrfC | ||
| PmCQ2_1g0553 | Pmu_15880 | PMCN06_1607 | NT08PM_1650 | PM1357 | Elongation factor Tu, partial | ||
| PmCQ2_1g0157 | Pmu_20230 | PMCN06_2025 | NT08PM_2100 | PM1746 | |||
| PmCQ2_3g0367 | Nonspecific tight adherence protein D, partial | ||||||
| PmCQ6_2g0065 | Pmu_09310 | NT08PM_0414 | PM0846 | Nonspecific tight adherence protein D | |||
| PmCQ6_6g0048 | Nucleoside-diphosphate sugar epimerase/dehydratase | ||||||
|
| |||||||
| Secreted proteins | PmCQ2_1g0033 | Pmu_14370 | PMCN06_1474 | NT08PM_1498 | PM1897 | Hypothetical protein, uncharacterized lipoprotein PM1897 | |
| PmCQ2_3g0252 | Pmu_08050 | PMCN06_0796 | NT08PM_0537 | PM0734 | Periplasmic serine protease do/hhoA-like protein | ||
| PmCQ2_2g0088 | ModB, partial | ||||||
|
| |||||||
| Membrane proteins | PmCQ2_1g0666 | Pmu_21540 | PMCN06_2233 | NT08PM_2236 | PM1230 | Penicillin-binding protein 1A | |
| NT08PM_2237 | |||||||
| PmCQ2_4g0293 | Pmu_13260 | PMCN06_1306 | NT08PM_1389 | PM0004 | Bicyclomycin resistance protein-1 | ||
| PmCQ6_1g0027 | Pmu_21770 | NT08PM_2255 | PM1212 | Mercuric transport protein MerT | |||
| PmCQ6_C4143g0001 | PMCN06_1416 | Glycoside hydrolase | |||||
| PmCQ6_17g0010 | PMCN06_2075 | Hypothetical protein PMCN06_2075 | |||||
| PmCQ6_9g0003 | Tail assembly protein I | ||||||
| PmCQ6_14g0071 | C4-dicarboxylate ABC transporter permease | ||||||
| PmCQ6_23g0011 | Hypothetical protein, partial | ||||||