Skip to main content
. 2016 Dec 28;11(12):e0168485. doi: 10.1371/journal.pone.0168485

Table 1. X-ray data measurement and refinement statistics for CtDsbA.

Data collection and processing
Wavelength (Å) 1.54187
Resolution range (Å) 43.3–2.7 (2.8–2.7)
Space group P 21 21 2
Unit cell dimensions
a,b,c (Å) 92.2, 98.1,44.8
α, β, γ (°) 90.0, 90.0,90.0
Rmerge 0.101 (0.401)
Rmeas (within I+/I-) 0.110 (0.429)
Rmeas (all I+ & I-) 0.109 (0.432)
Total number of observations 82358 (737)
Total number unique 11646 (102)
Mean((I)/sd(I)) 19.6 (5.9)
Mn(I) half-set correlation CC(1/2) 0.998 (0.880)
Completeness (%) 100 (86.4)
Multiplicity 7.1 (7.2)
Refinement and model quality
Refinement
R-factor (%) 24.76 (30.84)
§R-free (%) 28.23 (38.54)
Number of atoms 6176
 macromolecules 3083
 ligands
 water 22
Protein residues 390
R.M.S.D from ideal geometry
RMS(bonds) (Å) 0.003
RMS(angles) (°) 0.69
Molprobity analysis
Ramachandran favored (%) 96.84
Ramachandran outliers (%) 0.26
Clashscore* 6.36 ((100th percentile* (N = 186, 2.706 Å ± 0.25Å))
Molprobity score** 1.74 ((100th percentile* (N = 5290, 2.706 Å ± 0.25Å))
Average B-factor (Å2) 45.90
 macromolecules 45.90
 Solvent 44.20

Values in parentheses refer to the highest resolution shell

Rfactor = Σh||Fobs|h − |Fcalc|h | /Σh|Fobs|h, where h defines the unique reflections

§ Rfree calculated over 5.0% of total reflections excluded from refinement

* Clashscore: 100th percentile is the best among structures of comparable resolution; 0th percentile is the worst. For clashscore the comparative set of structures was selected in 2004, for MolProbity score in 2006

** MolProbity score combines the clashscore, rotamer, and Ramachandran evaluations into a single score, normalized to be on the same scale as X-ray resolution