Table 4. Summary data on the NEXUS generation process for Bacillus cereus benchmarking.
Running time is displayed using hours:minutes:seconds format.
| Dataset | Settings | Speclust average running time | MrBayes average running time | TOTAL average running time | ||
|---|---|---|---|---|---|---|
| Subcellular location | Isoelectric Point | Peptide Size | ||||
| All genomes | Extracellular | All | All | 0:22:11 | 0:13:51 | 0:36:02 |
| Cytoplasmatic | 4.5–5.5 | 50–60 | 0:05:47 | 0:05:42 | 0:11:29 | |
| Cytoplasmatic | All | 50–60 | 0:18:24 | 0:04:27 | 0:22:51 | |
| Cytoplasmatic | 4.5–5.5 | 60-more | 0:05:13 | 0:17:41 | 0:22:54 | |
| Cytoplasmatic | All | 60-more | 0:16:38 | 0:23:33 | 0:40:11 | |
| Cytoplasmatic | 4.5–5.5 | 28-more | 0:20:41 | 0:16:33 | 0:37:14 | |
| Cytoplasmatic | All | 28-more | 2:08:16 | 0:22:08 | 2:30:24 | |
| 24 genomes | Extracellular | All | All | 0:10:01 | 0:09:50 | 0:19:51 |
| Cytoplasmatic | 4.5–5.5 | 50–60 | 0:03:10 | 0:04:29 | 0:07:40 | |
| Cytoplasmatic | All | 50–60 | 0:11:13 | 0:03:36 | 0:14:49 | |
| Cytoplasmatic | 4.5–5.5 | 60-more | 0:04:07 | 0:13:14 | 0:17:21 | |
| Cytoplasmatic | All | 60-more | 0:13:20 | 0:17:32 | 0:30:52 | |
| Cytoplasmatic | 4.5–5.5 | 28-more | 0:11:13 | 0:12:45 | 0:23:58 | |
| Cytoplasmatic | All | 28-more | 1:13:45 | 0:16:32 | 1:30:17 | |
| 16 genomes | Extracellular | All | All | 0:05:05 | 0:06:23 | 0:11:28 |
| Cytoplasmatic | 4.5–5.5 | 50–60 | 0:02:23 | 0:03:48 | 0:06:11 | |
| Cytoplasmatic | All | 50–60 | 0:07:55 | 0:02:02 | 0:09:57 | |
| Cytoplasmatic | 4.5–5.5 | 60-more | 0:02:09 | 0:08:29 | 0:10:38 | |
| Cytoplasmatic | All | 60-more | 0:05:13 | 0:10:56 | 0:16:09 | |
| Cytoplasmatic | 4.5–5.5 | 28-more | 0:04:38 | 0:07:57 | 0:12:35 | |
| Cytoplasmatic | All | 28-more | 0:31:54 | 0:11:13 | 0:43:07 | |
| 8 genomes | Extracellular | All | All | 0:01:22 | 0:01:57 | 0:03:19 |
| Cytoplasmatic | 4.5–5.5 | 50–60 | 0:00:54 | 0:01:35 | 0:02:29 | |
| Cytoplasmatic | All | 50–60 | 0:03:17 | 0:01:21 | 0:04:38 | |
| Cytoplasmatic | 4.5–5.5 | 60-more | 0:01:15 | 0:02:17 | 0:03:32 | |
| Cytoplasmatic | All | 60-more | 0:04:04 | 0:02:26 | 0:06:31 | |
| Cytoplasmatic | 4.5–5.5 | 28-more | 0:01:47 | 0:01:52 | 0:03:39 | |
| Cytoplasmatic | All | 28-more | 0:12:05 | 0:02:04 | 0:14:09 | |
| 4 genomes | Extracellular | All | All | 0:00:39 | 0:00:47 | 0:01:25 |
| Cytoplasmatic | 4.5–5.5 | 50–60 | 0:00:59 | 0:00:37 | 0:01:36 | |
| Cytoplasmatic | All | 50–60 | 0:01:33 | 0:00:37 | 0:02:10 | |
| Cytoplasmatic | 4.5–5.5 | 60-more | 0:00:27 | 0:00:35 | 0:01:01 | |
| Cytoplasmatic | All | 60-more | 0:01:26 | 0:00:42 | 0:02:08 | |
| Cytoplasmatic | 4.5–5.5 | 28-more | 0:00:35 | 0:00:49 | 0:01:24 | |
| Cytoplasmatic | All | 28-more | 0:02:46 | 0:01:01 | 0:03:47 | |