Table 1. Overview of assembly and annotation for the female guppy genome.

Contigs longer than 1kb	44,571
Total length of all contigs	663,389,323 bp
N50 length of contigs	35,577 bp
Scaffolds	3,028
Total length of all scaffolds	731,579,643 bp
Length of unclosed gaps	66,967,969 bp
Median size of gaps in scaffolds	535 bp
Lengths of scaffolds anchored on linkage groups	696,674,853 bp
Scaffolds anchored on linkage groups	284
Longest scaffold	21,430,553 bp
N50 length of scaffolds	5,270,359 bp
N90 length of scaffolds	1,021,883 bp
Scaffolds longer than N50 length	43
Scaffolds longer than N90 length	163
GC content	39.3%
Protein-coding genes	22,982
Pseudogenes	249
Fraction of transposable elements	21.3%