Table 1. Overview of assembly and annotation for the female guppy genome.
Contigs longer than 1kb | 44,571 |
Total length of all contigs | 663,389,323 bp |
N50 length of contigs | 35,577 bp |
Scaffolds | 3,028 |
Total length of all scaffolds | 731,579,643 bp |
Length of unclosed gaps | 66,967,969 bp |
Median size of gaps in scaffolds | 535 bp |
Lengths of scaffolds anchored on linkage groups | 696,674,853 bp |
Scaffolds anchored on linkage groups | 284 |
Longest scaffold | 21,430,553 bp |
N50 length of scaffolds | 5,270,359 bp |
N90 length of scaffolds | 1,021,883 bp |
Scaffolds longer than N50 length | 43 |
Scaffolds longer than N90 length | 163 |
GC content | 39.3% |
Protein-coding genes | 22,982 |
Pseudogenes | 249 |
Fraction of transposable elements | 21.3% |