Table 4.
Global reassortant lineage | High Local reassortant lineage | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
N America | SC America | Asia | Australia | M Easta | |||||||
Segment/Position | X (Red) | XII (Dark Red) | III (Light Blue) | XI (Maroon) | XIV (Purple) | VII (Green) | IV (BlueD) | XIII (Orange) | VI (GreenL) | II (Dark Blue)a | |
Shannon entropy differences | NA/151 | D/N/G | D/N/G | D/N | D | D/ G | D | D | D | D | D/N |
HA/215 | A/S | A/S | S | S | S | S | S | S | S | S | |
Amino acid differences Global vs. Local | PB2/81 | I | I | I | M | M | M | M | M | M | M |
PB2/255 | I | I | I | V | V | V | V | V | V | V | |
PB2/392 | D | D | D | E | E | E | E | E | E | E | |
Amino acid differences Local | PB2/221 | S | S | A | S | S | A | A | A | A | A |
PB2/293 | K | K | R | K | K | R | R | R | R | R | |
PB2/353 | K | K | R | K | K | R | R | R | R | R | |
PB2/560 | I/V | I/V | I/V | I | I | V | V | V | V | V |
aAlthough assigned High Local by the criteria, it cannot with certainty be regarded as such due to low regional and temporal sampling. It was included for exploratory purposes only
D/N Position was not conserved in this reassortant lineage, and the Shannon entropy of the Global reassortants was not significantly higher in any of the pairwise comparisons
D/ G Only one of the reassortant genomes had a differing amino acid in this position. Shannon entropy of the Global reassortants was not significantly higher in any of the pairwise comparisons
D Position was conserved in these reassortant lineages, but the Shannon entropy of the Global reassortants was not significantly higher in any of the pairwise comparisons