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. 2016 Dec 29;14:117. doi: 10.1186/s12915-016-0337-3

Table 4.

Amino acid position differences between Global and High Local reassortant lineages

Global reassortant lineage High Local reassortant lineage
N America SC America Asia Australia M Easta
Segment/Position X (Red) XII (Dark Red) III (Light Blue) XI (Maroon) XIV (Purple) VII (Green) IV (BlueD) XIII (Orange) VI (GreenL) II (Dark Blue)a
Shannon entropy differences NA/151 D/N/G D/N/G D/N D D/ G D D D D D/N
HA/215 A/S A/S S S S S S S S S
Amino acid differences Global vs. Local PB2/81 I I I M M M M M M M
PB2/255 I I I V V V V V V V
PB2/392 D D D E E E E E E E
Amino acid differences Local PB2/221 S S A S S A A A A A
PB2/293 K K R K K R R R R R
PB2/353 K K R K K R R R R R
PB2/560 I/V I/V I/V I I V V V V V

aAlthough assigned High Local by the criteria, it cannot with certainty be regarded as such due to low regional and temporal sampling. It was included for exploratory purposes only

D/N Position was not conserved in this reassortant lineage, and the Shannon entropy of the Global reassortants was not significantly higher in any of the pairwise comparisons

D/ G Only one of the reassortant genomes had a differing amino acid in this position. Shannon entropy of the Global reassortants was not significantly higher in any of the pairwise comparisons

D Position was conserved in these reassortant lineages, but the Shannon entropy of the Global reassortants was not significantly higher in any of the pairwise comparisons