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. 2017 Jan;27(1):1–14. doi: 10.1101/gr.202945.115

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© 2017 Wong et al.; Published by Cold Spring Harbor Laboratory Press

This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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Figure 5. — Analysis of admixtures using D-statistics. Genetic affinities were determined using D-statistics test D(P1, P2, P3, O) as defined previously (Durand et al. 2011). (A) Mezen Russian affinities; (B) Veps affinities; (C) Ust’-Ishim affinities; (D) Mal'ta boy (MA-1) and Afontova Gora (AG-2) affinities; (E) Ire8 and Ajv52 affinities. The affinities of a variable population X (orange color) relative to other populations were calculated using ADMIXTOOLS (Patterson et al. 2012) and shown under the D column. Statistical significance of admixture was expressed as a z-score and shown under the Z column. A green font was used to highlight significant admixtures between P1 and P3 (Z > 3). A blue font was used to highlight significant admixture between P2 and P3 (Z < −3). African San was used as an outgroup in all tests. (And) Andreapol; (Ust) Ustyuzhna; (Ob) Objachevo. D-Statistics results using different outgroups (Chimp, Mandenka, Mbuti) are shown in Supplemental Figures S13 and S17.