Table 1.

Summary statistics of RNA-Seq reads (Illumina/HiSeq 2500) collected from three technical replicates of lowland AP13 and upland VS16 genotypes of switchgrass

Sample ID	Total reads	Total trimmed reads	Reads passing QC (%)	Reads mapped	Reads mapped (%)	Reads with gene counts	Reads with gene counts (%)
AP13Rep1	43196737	43106501	99.79	39131924	90.8	18879959	48.24
AP13Rep2	50085105	49972031	99.77	45549852	91.2	17859109	39.20
AP13Rep3	40114835	40031015	99.79	36632734	91.5	16913617	46.17
VS16Rep1	46487777	46393034	99.80	42595217	91.8	25849058	60.68
VS16Rep2	46895932	46808693	99.81	42878187	91.6	24777723	57.78
VS16Rep3	42174644	42074699	99.76	37274103	88.6	18723830	50.23