Table 2. Primer sequences, together with their optimum annealing temperature and product size, used for the gene expression studies in Atlantic salmon skin cDNA.
Gene | Primers | Sequence (5’-3’) | PS*/ bp | Ann.† T/°C | E% § | R2¤ | |
---|---|---|---|---|---|---|---|
Name | Accession | ||||||
Elongation factor 1α | BT060384 | EEF1a_F | CAAGGATATCCGTCGTGGCA | 313 | 61 | 102 | 0.990 |
EEF1a_R | ACAGCGAAACGACCAAGAGG | ||||||
β-actin | BT047241 | ACTB_F | ATGGAAGATGAAATCGCCCC | 239 | 61 | 102 | 0.986 |
ACTB_R | TGCCAGATCTTCTCCATGTCG | ||||||
Calreticulin-like | BT072764 | CALRL_F | CCGCTGACTCTACCATCTACAA | 192 | 62 | 101 | 0.993 |
CALRL_R | CTTGTCATCTTCCTCCTGTTTC | ||||||
Calreticulin | BT044674 | CALR_F | AACATTGGAGTGTTGGGTCTGG | 173 | 67 | 102 | 0.996 |
CALR_R | TTTCCTCTCCTCCTCCTCCTGT | ||||||
60S acidic ribosomal | BT059903 | RPLP0_F | GTTGCTGCCTCACATCAAAG | 211 | 59 | 87 | 0.990 |
protein P0 | RPLP0_R | AGATCTTGGTGGTGATGCC | |||||
Hemopexin-like protein | Z68112 | HPXL_F | AGAGGCCACCACTTCCTGGA | 225 | 66 | ||
HPXL_R | TCCACTCCCAGCACCTCCTT | ||||||
40kDa peptidyl-prolyl | BT046523 | PPID_F | GAAGCCATGTGTAATTGCTGAG | 240 | 62 | 102 | 0.990 |
cis-trans isomerase | PPID_R | CAGATACCTGAGAGCTTTGGAGT | |||||
Keratin, type I | AJ427868 | KRT13_F | GAAGGAGGAGCTCATCTATCTCAAG | 209 | 60 | 99 | 0.997 |
cytoskeletal 13 | KRT13_R | GTCTCCGTCTTGGTCTGGAA | |||||
Glyceraldehyde-3- | BT045621 | GAPDH_F | ATGACCACAGTCCACGCCTA | 169 | 65 | 81 | 0.991 |
phosphate dehydrogenase | GAPDH_R | ATGCCAGTCAGCTTGCCGTT |
* PS = product size
†Ann. = annealing
§ E% = primer efficiency
¤ R2 = coefficient of determination.