TABLE 2.
Amino acid identities of partial chlorite dismutase protein sequences
Source or organism and ID no.a | % Amino acid identity with sample no:
|
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---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | |
1. D. agitata | 74.8 | 76.4 | 64.2 | 78.9 | 65.0 | 63.4 | 64.2 | 62.6 | 69.1 | 68.3 | 64.2 | 74.0 | 74.8 | 73.2 | 72.4 | 73.2 | 69.1 | 69.9 | |
2. M. magneto | 74.8 | 80.5 | 65.9 | 77.2 | 66.7 | 65.0 | 65.9 | 64.2 | 81.3 | 82.1 | 65.9 | 82.1 | 81.3 | 79.7 | 78.9 | 79.7 | 82.9 | 82.9 | |
3. I. dechloratans | 76.4 | 80.5 | 64.2 | 78.9 | 65.0 | 63.4 | 63.4 | 63.4 | 72.4 | 72.4 | 64.2 | 71.5 | 72.4 | 70.7 | 69.9 | 70.7 | 72.4 | 73.2 | |
4. “D. aromatica” | 64.2 | 65.9 | 64.2 | 64.2 | 98.4 | 98.4 | 97.6 | 95.9 | 66.7 | 65.9 | 100 | 65.9 | 66.7 | 65.9 | 64.2 | 65.0 | 66.7 | 67.5 | |
5. Dcm. strain LT1 | 78.9 | 77.2 | 78.9 | 64.2 | 65.0 | 63.4 | 64.2 | 62.6 | 73.2 | 73.2 | 64.2 | 77.2 | 78.0 | 76.4 | 76.4 | 77.2 | 73.2 | 74.0 | |
6. Pseud. strain PK | 65.0 | 66.7 | 65.0 | 98.4 | 65.0 | 98.4 | 95.9 | 95.1 | 68.3 | 66.7 | 98.4 | 66.7 | 67.5 | 65.9 | 65.0 | 65.9 | 68.3 | 69.1 | |
7. “D. chlorophilus” | 63.4 | 65.0 | 63.4 | 98.4 | 63.4 | 98.4 | 95.9 | 95.1 | 66.7 | 65.0 | 98.4 | 65.0 | 65.9 | 65.0 | 63.4 | 64.2 | 66.7 | 67.5 | |
8. D. suillum | 64.2 | 65.9 | 63.4 | 97.6 | 64.2 | 95.9 | 95.9 | 95.1 | 66.7 | 65.9 | 97.6 | 65.9 | 66.7 | 65.9 | 64.2 | 65.0 | 66.7 | 67.5 | |
9. Strain CR | 62.6 | 64.2 | 63.4 | 95.9 | 62.6 | 95.1 | 95.1 | 95.1 | 65.0 | 64.2 | 95.9 | 64.2 | 65.0 | 64.2 | 62.6 | 63.4 | 65.0 | 65.9 | |
10. “D. anomalous” | 69.1 | 81.3 | 72.4 | 66.7 | 73.2 | 68.3 | 66.7 | 66.7 | 65.0 | 95.9 | 66.7 | 82.9 | 83.7 | 82.1 | 81.3 | 82.1 | 97.6 | 98.4 | |
11. Dsp. strain DB | 68.3 | 82.1 | 72.4 | 65.9 | 73.2 | 66.7 | 65.0 | 65.9 | 64.2 | 95.9 | 65.9 | 82.9 | 83.7 | 82.1 | 81.3 | 82.1 | 96.7 | 97.6 | |
12. Los Alamos well 3 | 64.2 | 65.9 | 64.2 | 100 | 64.2 | 98.4 | 98.4 | 97.6 | 95.9 | 66.7 | 65.9 | 65.9 | 66.7 | 65.9 | 64.2 | 65.0 | 66.7 | 67.5 | |
13. Los Alamos well 4 | 74.0 | 82.1 | 71.5 | 65.9 | 77.2 | 66.7 | 65.0 | 65.9 | 64.2 | 82.9 | 82.9 | 65.9 | 99.2 | 97.6 | 96.7 | 96.7 | 83.7 | 83.7 | |
14. Lake Hoare 12m-A | 74.8 | 81.3 | 72.4 | 66.7 | 78.0 | 67.5 | 65.9 | 66.7 | 65.0 | 83.7 | 83.7 | 66.7 | 99.2 | 98.4 | 97.6 | 97.6 | 83.7 | 84.6 | |
15. Lake Hoare 12m-B | 73.2 | 79.7 | 70.7 | 65.9 | 76.4 | 65.9 | 65.0 | 65.9 | 64.2 | 82.1 | 82.1 | 65.9 | 97.6 | 98.4 | 95.9 | 95.9 | 82.1 | 82.9 | |
16. Lake Fryxell sed-A | 72.4 | 78.9 | 69.9 | 64.2 | 76.4 | 65.0 | 63.4 | 64.2 | 62.6 | 81.3 | 81.3 | 64.2 | 96.7 | 97.6 | 95.9 | 98.4 | 81.3 | 82.1 | |
17. Lake Fryxell sed-B | 73.2 | 79.7 | 70.7 | 65.0 | 77.2 | 65.9 | 64.2 | 65.0 | 63.4 | 82.1 | 82.1 | 65.0 | 96.7 | 97.6 | 95.9 | 98.4 | 82.1 | 82.9 | |
18. Vida-A | 69.1 | 82.9 | 72.4 | 66.7 | 73.2 | 68.3 | 66.7 | 66.7 | 65.0 | 97.6 | 96.7 | 66.7 | 83.7 | 83.7 | 82.1 | 81.3 | 82.1 | 99.2 | |
19. Vida-B | 69.9 | 82.9 | 73.2 | 67.5 | 74.0 | 69.1 | 67.5 | 67.5 | 65.9 | 98.4 | 97.6 | 67.5 | 83.7 | 84.6 | 82.9 | 82.1 | 82.9 | 99.2 |
ID no., identification no. for sample (numbers correspond to numbers in column heads); Dcm. strain LT1, Dechloromonas sp. strain LT1; Pseud. strain PK, Pseudomonas sp. strain PK; Dsp. strain DB, Dechlorospirillum sp. strain DB; Lake Hoare 12m-A and 12m-B, clones A and B from 12-m water column of Lake Hoare; Lake Fryxell sed-A and sed-B, clones A and B from Lake Fryxell sediment; Vida-A and Vida-B, clones A and B from Vida.