TABLE 1.
Substrate or AT domain | Conserved pattern sequences | Predicted substrate(s) | ||
---|---|---|---|---|
Substratesb | ||||
M | (Q/R/D/E)TX(Y/F) (T/A)Q | GHS(L/V/I)GE | H(A/G)FH | |
mM | R(V/A/I)(D/E)VVQ | GHS(Q/M)GE | YASH | |
eM | RVDVV(Q/H) | GHSQGE | TAGH | |
AT domains | ||||
Lib4 | RTEIAQ | GHSVGE | YAFH | M, mM |
Lib7 | ETIYTQ | GHSIGE | RAFH | M |
Lib10 | APSVGL | GHSMGE | VAAH | M, mM |
Reeves signature model (23). The consensus patterns for malonyl, methylmalonyl, and ethylmalonyl are given with all possibilities (indicated in parentheses). Signatures of the metagenomic AT domains were extracted and reported with the deduced substrate(s).
M, malonyl; mM, methylmalonyl; eM, ethylmalonyl.