Table 3.

Non-synonymous mutations in genes related to nutrient acquisition and local environment.

Pair ID	Gene	Position*	Amino acid Substitution
1	GTPase	524:gCa-gAa	Ala-175-Glu
1	L-xylulose/3-keto-L-gulonate kinase	65:cAc-cGc	His-22-Arg
2	taurine-binding periplasmic protein	523:Gtc-Atc	Val-175-Ile
5	protein CsiD	718:Gtg-Atg	Val-240-Met
11	cold shock-like protein CspE	179:gGc-gAc	Gly-60-Asp
11	periplasmic AppA protein	125:cGt-cAt	Arg-42-His
11	D-tagatose-1,6-bisphosphate aldolase subunit kbaZ	169:Ggc-Agc	Gly-57-Ser
11	PTS system protein	761:tAt-tGt	Tyr-254-Cys
11	protein ydeP	2239:Tga-Cga	STP-747-Arg
20	dihydrolipoyl dehydrogenase	1124:gAa-gCa	Glu-375-Ala
22	carboxysome structural protein, ethanolamine utilization	271:Aaa-Taa	Lys-91-STP
23	carbamate kinase	328:Cag-Gag	Gln-110-Glu
23	inner membrane protein	1894:Tca-Cca	Ser-632-Pro
27	maltodextrin phosphorylase	791:gTc-gCc	Val-264-Ala
28	Phosphomannomutase	661:Att-Gtt	Ile-221-Val
31	maltose regulon periplasmic protein	653:tCg-tTg	Ser-218-Leu
32	tautomerase ppt	176:gAa-gCa	Glu-59-Ala
33	GTPase	784:Gtt-Att	Val-262-Ile
33	oxygen-insensitive NADPH nitroreductase	214:Taa-Caa	STP-72-Gln
34	Phosphomannomutase	880:Gtt-Att	Val-294-Ile
37	phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive	198:gaA-gaT	Glu-66-Asp
37	carbon storage regulator	34:Ttc-Ctc	Phe-12-Leu
37	carbon storage regulator	32:aCc-aTc	Thr-11-Ile
37	undecaprenyl-phosphate galactose phosphotransferase WbaP	238:Gaa-Taa	Glu-80-STP
40	Ecotin	56:tTg-tGg	Leu-19-Trp
42	serine/threonine-protein phosphatase 1	126:gaT-gaA	Asp-42-Glu
42	inorganic phosphate transporter 1	1265:cAg-cCg	Gln-422-Pro
43	ribosomal RNA large subunit methyltransferase L	664:Tgt-Cgt	Cys-222-Arg

^*Capital letters indicate the codon position of the mutation

STP: Stop codon