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. Author manuscript; available in PMC: 2018 Jan 1.
Published in final edited form as: Anal Bioanal Chem. 2016 Aug 4;409(2):487–497. doi: 10.1007/s00216-016-9776-5

Table 1.

DAVIDGO algorithm pathways and biological processes enriched based on Uniprot Poplar proteins identified by motif containing, deamidated peptides found exclusively in the PNGase F/Glycosidase A treated samples. Annotations obtained from DAVIDGO algorithm (david.ncifcrf.gov).

Pathways and Processes Enriched Count P-Value
Methane metabolism 3 3.30E-02
Biosynthesis of alkaloids derived from shikimate pathway 9 4.10E-02
Carbon fixation in photosynthetic organisms 6 4.40E-02
Biosynthesis of plant hormones 12 4.40E-02
Other glycan degradation 3 4.60E-02
Glyoxylate and dicarboxylate metabolism 4 5.50E-02
Citrate cycle (TCA cycle) 5 6.70E-02
Pyruvate metabolism 5 6.70E-02
Tryptophan metabolism 3 8.70E-02
Posttranslational modification, protein turnover, chaperones 13 1.20E-03
Intracellular trafficking and secretion 5 3.20E-02
Carbohydrate metabolic process 37 7.80E-07
Phenylpropanoid metabolic process 4 4.70E-02
Protein localization in nucleus 4 9.50E-03
Modification-dependent protein catabolic process 9 1.60E-02
Microtubule-based movement 10 3.20E-05