Table 3.
Filtered variant metrics for strains CEN.PK113-7D, JL1, and F3 using strain S288C as a reference genome
| Chr. | Position | Reference (S288C) |
CEN.PK113-7D | JL1 | F3 | Status | ORF | |
|---|---|---|---|---|---|---|---|---|
| VII | 978,157 | C | C | T | C | Lost in backcross | LCS2 | Missense |
| VIII | 38,156 | G | G | A | A | Segregating | GUT1 | Missense |
| IX | 257,480 | CAAAA | CAAAAAA | AAAAA | CAAAAAA | Lost in backcross | RPL34B | Upstream (+1000) |
| IX | 287,261 | C | A | C | A | Lost in backcross | CST6 | Missense |
| XII | 189,434 | G | T | C | C | Segregating | UBR2 | Nonsense |
| XII | 829,429 | ATGTAT | ATGTAT | AT | ATGTAT | Lost in backcross | ORM2 | Downstream (-300) |
| XIII | 758,921 | GTATGT | GTATGT | GT | GTATGT | Lost in backcross | FAA4 | Upstream (+1000) |
| XV | 397,664 | T | C | T | C | Lost in backcross | YOR034C-A | Missense |
| XVI | 339,778 | A | A | C | A | Lost in backcross | CAR1 | Upstream (+1000) |
| M | 2110 | C | G | C | G | Lost in backcross | Intergenic |