Table 3.
QTLs identified for 11 fruit quality traits
| Trait | QTL | Chr. | Position (Mb)a | Marker interval | LOD | PVEb | Additive |
|---|---|---|---|---|---|---|---|
| effectc | |||||||
| Fruit weight | fw2.1 | T2 | 51.6–52 | SpimpSNP_chr2_51653038 - SpimpSNP_chr2_52236461 | 3.1 | 15 | S. pimpinellifolium |
| Fruit weight | fw4.1 | T4 | 22.5–22.9 | SpimpSNP_chr4_21588199 - SpimpSNP_chr4_23188806 | 5.6 | 26 | S. lycopersicum |
| Fruit weight | fw6.1 | T6 | 24.2–19.8 | SpimpSNP_chr6_23671779 - SpimpSNP_chr6_24889074 | 3.6 | 17 | S. lycopersicum |
| Dry matter weight | dw7.1 | T7 | 6–7.8 | SpimpSNP_chr7_2225863 - SpimpSNP_chr7_9627011 | 4.1 | 19 | S. lycopersicum |
| Dry matter weight | dw7.2 | T7 | 27.8–29.4 | SpimpSNP_chr7_26481282 - SpimpSNP_chr7_28434174 | 3.2 | 15 | S. lycopersicum |
| Dry matter weight | dw7.3 | T7 | 39.6–44.8 | SpimpSNP_chr7_39834929 - SpimpSNP_chr7_44678356 | 3 | 14 | S. lycopersicum |
| External color | exc1.1 | T1 | 67.6–67.8 | SpimpSNP_chr3_67613866 - SpimpSNP_chr3_67813317 | 3 | 11 | S. pimpinellifolium |
| External color | exc2.1 | T2 | 62.3–62.5 | SpimpSNP_chr4_62352850 - SpimpSNP_chr4_62544061 | 3 | 10 | S. pimpinellifolium |
| Internal color | inc2.1 | T2 | 23.6–23.8 | SpimpSNP_chr2_23655570 - SpimpSNP_chr2_24268112 | 4.9 | 23 | S. pimpinellifolium |
| Internal color | inc2.2 | T2 | 34.8 | SpimpSNP_chr2_34886535–SpimpSNP_chr2_35242658 | 4.5 | 20 | S. pimpinellifolium |
| Internal color | inc2.3 | T2 | 2–3.8 | SpimpSNP_chr2_640497–SpimpSNP_chr2_3894978 | 5 | 20 | S. pimpinellifolium |
| Internal color | inc4.1 | T4 | 16.5–16.7 | SpimpSNP_chr4_16565256 - SpimpSNP_chr4_18177074 | 3.4 | 15 | S. pimpinellifolium |
| Internal color | inc6.1 | T6 | 30.4 | SpimpSNP_chr6_30399172 - SpimpSNP_chr6_31009885 | 3.1 | 14 | S. lycopersicum |
| Internal color | inc7.1 | T7 | 34.3–34.4 | SpimpSNP_chr7_33799287 - SpimpSNP_chr7_34463608 | 4.2 | 16 | S. lycopersicum |
| Internal color | inc8.1 | T8 | 10.4–11 | SpimpSNP_chr8_10421348 - SpimpSNP_chr8_15081462 | 3.8 | 17 | S. pimpinellifolium |
| Internal color | inc10.1 | T10 | 51.4 | SpimpSNP_chr10_51446730 - SpimpSNP_chr10_53466408 | 5.5 | 24 | S. pimpinellifolium |
| Internal color | inc12.1 | T12 | 23.7–24.1 | SpimpSNP_chr12_21186959 - SpimpSNP_chr12_24152718 | 5.2 | 23 | S. lycopersicum |
| Locule number | ln2.1 | T2 | 47.2–51.4 | SpimpSNP_chr2_47074933 -SpimpSNP_chr2_51653038 | 7 | 30 | S. lycopersicum |
| Locule number | ln4.1 | T4 | 5.7 | SpimpSNP_chr4_5137285 - SpimpSNP_chr4_6526895 | 3.8 | 13 | S. lycopersicum |
| Wall thickness | wall10.1 | T10 | 21.6–22.6 | SpimpSNP_chr10_19888032 - SpimpSNP_chr10_23051275 | 3.4 | 15 | S. lycopersicum |
| Wall thickness | wall12.1 | T12 | 62.5 | SpimpSNP_chr12_52326486 - SpimpSNP_chr12_63747215 | 3 | 13 | S. lycopersicum |
| Firmness | firm1.1 | T1 | 2.8–3 | SpimpSNP_chr1_2881522 - SpimpSNP_chr1_8892676 | 3.5 | 14 | S. pimpinellifolium |
| Firmness | firm1.2 | T1 | 80.2–80.4 | SpimpSNP_chr1_79834277 - SpimpSNP_chr1_80687203 | 3.8 | 18 | S. pimpinellifolium |
| Firmness | firm4.1 | T4 | 2.5 | SpimpSNP_chr4_1705692 - SpimpSNP_chr4_2593932 | 4 | 19 | S. pimpinellifolium |
| Firmness | firm10.1 | T10 | SpimpSNP_chr10_1689980 - SpimpSNP_chr10_2014825 | 5.3 | 24 | S. pimpinellifolium | |
| Fruit shape | fs4.1 | T4 | 5.7 | SpimpSNP_chr4_5717067 - SpimpSNP_chr4_6526895 | 6,1 | 26 | S. lycopersicum |
| Fruit shape | fs10.1 | T10 | 11.2–11.8 | SpimpSNP_chr10_10418801 -SpimpSNP_chr10_12085921 | 5.2 | 14 | S. lycopersicum |
| Fruit shape | fs12.1 | T12 | 33.1–35.5 | SpimpSNP_chr12_33126847 - SpimpSNP_chr12_36718114 | 5.5 | 20 | S. lycopersicum |
| Fruit shape | fs12.2 | T12 | 59.7–62.7 | SpimpSNP_chr12_52326486 - SpimpSNP_chr12_63747215 | 5.2 | 23 | S. lycopersicum |
| Stem scar | sc7.1 | T7 | 64.4 | SpimpSNP_chr7_64272106 - SpimpSNP_chr7_64876647 | 3.6 | 16 | S. lycopersicum |
| Stem scar | sc10.1 | T10 | 29.8–35.6 | SpimpSNP_chr10_36881278 - SpimpSNP_chr10_29632232 | 3.3 | 3 | S. pimpinellifolium |
| Soluble solids content | ssc1.1 | T1 | 26.6–27.2 | SpimpSNP_chr1_24085783 - SpimpSNP_chr1_27278048 | 5.3 | 23 | S. pimpinellifolium |
| Soluble solids content | ssc2.1 | T2 | 36.6–38.6 | SpimpSNP_chr2_36642750 - SpimpSNP_chr2_38643210 | 8.2 | 34 | S. pimpinellifolium |
| Soluble solids content | ssc8.1 | T8 | 60.2–61.2 | SpimpSNP_chr8_60424301 - SpimpSNP_chr8_61250753 | 3.7 | 17 | S. lycopersicum |
| Soluble solids content | ssc10.1 | T10 | 22.8 | SpimpSNP_chr10_23051275 - SpimpSNP_chr10_19888032 | 3.6 | 17 | S. lycopersicum |
| pH | ph1.1 | T1 | 66.8 | SpimpSNP_chr1_65817896 - SpimpSNP_chr1_67006382 | 12 | 47 | S. lycopersicum |
| pH | ph8.1 | T8 | 63.8 | SpimpSNP_chr8_63683606 - SpimpSNP_chr9_755740 | 6.4 | 14 | S. lycopersicum |
aPeak position of QTL
bPercentage of phenotypic variation explained by identified QTL
cParental allele associated with increased trait value