Table 1.
Phyletic patterns of RH50 and AMT genes
| Taxonomya | Species | Statusb | RH50 | AMT |
|---|---|---|---|---|
| Euryarchaeota/Methanomicrobia/Methanomassiliicoccales | Methanomassiliicoccus luminyensis B10 | S/C | 1 | 1 |
| Ca. Methanomassiliicoccus intestinalis Issoire-Mx1 | Chr | 1 | 0 | |
| Euryarchaeota/Methanomicrobia/Methanosarcinales | Methanosalsum zhilinae WeN5 DSM 4017 | Chr | 1 | 1 |
| Bacteria/Planctomycetes | Ca. Kuenenia stuttgartiensis | C | 1 | 4 |
| Planctomycetaceae bacterium KSU-1 | S/C | 1 | 7 | |
| Ca. Brocadia anammoxidans (WQC04)c | nd | 1 | 5 | |
| Bacteria/Proteobacteria/Betaproteobacteria | Nitrosomonas europaea ATCC 19718 | Chr | 1 | 0 |
| Nitrosomonas sp. Is79A3 | Chr | 1 | 0 | |
| Nitrosomonas sp. AL212 | Chr | 1 | 0 | |
| Nitrosospira multiformis ATCC 25196 | Chr | 1 | 0 | |
| Nitrosospira briensis C-128 | PD | 1 | 0 | |
| Nitrosospira sp. APG3 | S/C | 1 | 0 | |
| Bacteria/Proteobacteria/Deltaproteobacteria | Geobacter sp. M21 | Chr | 1 | 2 |
| Bacteria/Firmicutes/Clostridia/Clostridiales/Clostridiaceae | Clostridium papyrosolvens DSM 2782 | S/C | 1 | 3 |
| Clostridium papyrosolvens C7 | S/C | 1 | 2 | |
| Clostridium cellulovorans 743B | Chr | 1 | 2 | |
| Clostridium carboxidivorans P7 | S/C | 1 | 1 | |
| Clostridium viride DSM6836 | PD | 1 | 0 | |
| Clostridium sp. BNL1100 | Chr | 1 | 2 | |
| Clostridium scatologenes ATCC 25775 | PD | 1 | 3 | |
| Bacteria/Firmicutes/Clostridia/Clostridiales/Eubacteriaceae | Eubacterium acidaminophilum al-2, DSM 3953 | C | 1 | 0 |
| Bacteria/Firmicutes/Clostridia/Clostridiales/Peptococcaceae | Dehalobacter sp. 11DCA | Chr | 1 | 2 |
| Desulfotomaculum acetoxidans DSM 771 | Chr | 1 | 3 | |
| Bacteria/Firmicutes/Clostridia/Clostridiales/Peptostreptococcaceae | Clostridium litorale W6 | PD | 1 | 0 |
| Bacteria/Firmicutes/Clostridia/Clostridiales/Ruminococcaceae | Acetivibrio cellulolyticus CD2 | S/C | 1 | 3 |
| Bacteroides cellulosolvens DSM 2933 | PD | 1 | 4 | |
| Bacteria/Firmicutes/Clostridia/Halanaerobiales | Acetohalobium arabaticum DSM 5501 | Chr | 1 | 1 |
| Bacteria/Firmicutes/Clostridia/Clostridiales/Family XIII incertae sedis | Anaerovorax odorimutans DSM 5092 | PD | 1 | 0 |
| Bacteria/Actinobacteria | Citricoccus sp. CH26A | S/C | 1 | 1 |
| Bacteria/Fibrobacteres-Acidobacteria group | Candidatus Koribacter versatilis Ellin345 | Chr | 1 | 2 |
| Eukaryota/Parabasalia | Trichomonas vaginalis G3 | S/C | 3 | 0 |
aNCBI taxonomy, except for Methanomassiliicoccales [34]
bGenome status. NCBI (Chr = Chromosome; S/C = Scaffolds/Contigs). IMG (C = Complete; PD = Permanent Draft)
cThe Brocadia genome (NCBI taxid:174632) was removed from the JGI-IMG database on March 2014