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. 2016 Oct 28;45(Database issue):D128–D134. doi: 10.1093/nar/gkw1008

Table 1. Expert Databases imported into RNAcentral since release 1.

Database name Description URL
DictyBase A model organism database for the social amoeba Dictyostelium discoideum http://dictybase.org
Greengenes A full-length 16S rRNA gene database that provides a curated taxonomy based on de novo tree inference http://greengenes.secondgenome.com/downloads
LNCipedia An integrated database of human lncRNAs http://www.lncipedia.org
MODOMICS A comprehensive database of RNA modifications http://modomics.genesilico.pl
NONCODE An integrated knowledge database dedicated to ncRNAs (excluding tRNAs and rRNAs) http://www.noncode.org
PDB A repository of information about the 3D structures of large biological molecules http://www.wwpdb.org/
PomBase A comprehensive database for the fission yeast Schizosaccharomyces pombe http://www.pombase.org
SGD An integrated database for the budding yeast http://yeastgenome.org
SILVA A resource for quality checked and aligned ribosomal RNA sequence data http://www.arb-silva.de/
snoPY A database of snoRNAs, snoRNA gene loci, and target RNAs as well as snoRNA orthologues http://snoopy.med.miyazaki-u.ac.jp/
TAIR A database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana http://www.arabidopsis.org
WormBase A resource for genomic and genetic data about nematodes with primary emphasis on Caenorhabditis elegans http://www.wormbase.org