Table 1. Statistics on conditionally essential genes in selected species with least 200 genes covered by multiple data sets in OGEE.
Species | data sets | tested genes | essential genes | genes covered by multiple data sets | conditionally essential genes |
---|---|---|---|---|---|
Homo sapiens | 18 | 21 556 | 7168 | 18 855 | 6985 (37.0%) |
Schizosaccharomyces pombe | 7 | 5509 | 1571 | 2522 | 279 (11.1%) |
Drosophila melanogaster | 2 | 13 781 | 408 | 437 | 141 (32.3%) |
Pseudomonas aeruginosa UCBPP-PA14 | 4 | 5966 | 1842 | 5300 | 1455 (27.5%) |
Escherichia coli K12 | 4 | 4322 | 740 | 4066 | 509 (12.5%) |
Mycobacterium tuberculosis H37Rv | 5 | 4008 | 1028 | 4002 | 1388 (34.7%) |
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | 4 | 3774 | 1514 | 2715 | 1130 (41.6%) |
Staphylococcus aureus subsp. aureus NCTC 8325 | 2 | 2899 | 557 | 2713 | 250 (9.2%) |
Haemophilus influenzae Rd KW20 | 4 | 1750 | 847 | 1634 | 617 (37.8%) |
Mycoplasma pneumoniae M129 | 2 | 1203 | 508 | 1203 | 196 (16.3%) |
Species having at least 200 genes covered by multiple data sets are listed here; the species are ordered first by the kingdom they are in (the 1st column) and then by the number of genes covered by multiple data sets (the 5th column). Essential genes are those that are essential in any collected data sets, i.e. genes that are essential in one data set but non-essential in others are also counted. The proportion of conditionally essential genes (PCEG, percentage in parentheses of the last column) is calculated as the ratio between the ‘conditionally essential genes’ (the last column) and the ‘genes covered by multiple data sets’ (the 5th column). Please note that text-mining results, if available, will be counted as one data set in a species; please consult the ‘Browse’ page of the database for a complete and interactive version of the table.