Table 1. Genomes with AMR metadata that are available in PATRIC.
| Genomes with AMR metadata | Genomes with MIC dataa | Genomes with SIR Datab | Antibiotics testedc | |
|---|---|---|---|---|
| Achromobacter | 1 | 1 | 0 | 18 |
| Acinetobacter | 506 | 95 | 505 | 31 |
| Aerococcus | 1 | 1 | 0 | 18 |
| Citrobacter | 6 | 6 | 2 | 25 |
| Corynebacterium | 1 | 1 | 0 | 14 |
| Enterobacter | 69 | 66 | 14 | 31 |
| Enterococcus | 9 | 0 | 9 | 8 |
| Escherichia | 51 | 47 | 26 | 29 |
| Hafnia | 1 | 1 | 0 | 9 |
| Klebsiella | 343 | 270 | 160 | 31 |
| Leclercia | 1 | 1 | 0 | 18 |
| Lelliottia | 1 | 0 | 1 | 16 |
| Mycobacterium | 5110 | 177 | 5110 | 19 |
| Neisseria | 491 | 491 | 450 | 8 |
| Pseudomonas | 519 | 394 | 516 | 38 |
| Serratia | 4 | 4 | 3 | 16 |
| Staphylococcus | 2150 | 85 | 2150 | 27 |
| Streptococcus | 4439 | 1245 | 3553 | 30 |
aGenomes with minimum inhibitory concentration (MIC) data include data from a variety of testing methods such as Kirby–Bauer disc diffusion, E-test, BD Phoenix Automated Microbiology System, etc.
bGenomes where phenotypes have been determined as being susceptible, intermediate or resistant (SIR) to a given antibiotic. In these cases, the determination was made by the authors of the study.
cThe list of antibiotics may include data for entire classes of antibiotics, such as beta-lactams or carbapenems.