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. 2016 Nov 28;45(Database issue):D200–D203. doi: 10.1093/nar/gkw1129

Table 1. URLs and other resources associated with the CDD project.

URL Description
https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi CD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation
https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi BATCH CD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation. Up to 4,000 protein queries may be submitted per request
https://www.ncbi.nlm.nih.gov/cdd Entrez interface to CDD
https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml CDD project home page
https://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi CDART domain architecture viewer
ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd CDD FTP site, see README file for content
https://www.ncbi.nlm.nih.gov/Structure/cdtree/cdtree.shtml Domain hierarchy editor/viewer and protein structure/alignment viewer
ftp://ftp.ncbi.nlm.nih.gov/toolbox; executables can be obtained from: https://www.ncbi.nlm.nih.gov/BLAST/download.shtml RPS-BLAST stand-alone tool for searching databases of profile models, part of the NCBI toolkit distribution
https://www.ncbi.nlm.nih.gov/sparcle Entrez interface to SPARCLE (Subfamily Protein Architecture Labeling Engine)
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