| https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi |
CD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation |
| https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi |
BATCH CD-Search interface utilizing the RPS-BLAST algorithm and the model database, and to the CDART database of pre-computed domain annotation. Up to 4,000 protein queries may be submitted per request |
| https://www.ncbi.nlm.nih.gov/cdd |
Entrez interface to CDD |
| https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml |
CDD project home page |
| https://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi |
CDART domain architecture viewer |
| ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd |
CDD FTP site, see README file for content |
| https://www.ncbi.nlm.nih.gov/Structure/cdtree/cdtree.shtml |
Domain hierarchy editor/viewer and protein structure/alignment viewer |
|
ftp://ftp.ncbi.nlm.nih.gov/toolbox; executables can be obtained from: https://www.ncbi.nlm.nih.gov/BLAST/download.shtml
|
RPS-BLAST stand-alone tool for searching databases of profile models, part of the NCBI toolkit distribution |
| https://www.ncbi.nlm.nih.gov/sparcle |
Entrez interface to SPARCLE (Subfamily Protein Architecture Labeling Engine) |
